Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003068A_C01 KMC003068A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190726.1| unknown protein; protein id: At3g51580.1 [Arabi... 87 2e-16
ref|NP_683468.1| unknown protein; protein id: At1g64385.1 [Arabi... 45 6e-04
pir||T04997 hypothetical protein T16L1.290 - Arabidopsis thalian... 37 0.12
ref|NP_567937.1| expressed protein; protein id: At4g33800.1, sup... 37 0.12
gb|AAA32051.1| cytochrome P450 [Romanomermis culicivorax] 33 2.3
>ref|NP_190726.1| unknown protein; protein id: At3g51580.1 [Arabidopsis thaliana]
gi|11285599|pir||T45789 hypothetical protein F26O13.220
- Arabidopsis thaliana gi|6572079|emb|CAB63022.1|
putative protein [Arabidopsis thaliana]
Length = 390
Score = 86.7 bits (213), Expect = 2e-16
Identities = 40/76 (52%), Positives = 57/76 (74%), Gaps = 7/76 (9%)
Frame = -1
Query: 542 IPYQELEMA----LPVSASATNVESAEGWDQGWDDDWDDNVAVKSPGAVR---GISANGL 384
+PY+ELE++ L + +VE+A+ WD+GWDDDWD+N AVKSPG+ ISANGL
Sbjct: 316 VPYRELELSGGPGLENESGVHDVETAD-WDEGWDDDWDENNAVKSPGSAAKSVSISANGL 374
Query: 383 TSRSANKDGWDNNWDE 336
T+R+ N+DGWD++WD+
Sbjct: 375 TARAPNRDGWDHDWDD 390
>ref|NP_683468.1| unknown protein; protein id: At1g64385.1 [Arabidopsis thaliana]
gi|27311781|gb|AAO00856.1| Unknown protein [Arabidopsis
thaliana]
Length = 351
Score = 45.1 bits (105), Expect = 6e-04
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Frame = -1
Query: 536 YQELEMALPVSASATNVESAE-----GWDQGWDDDWDDNVA---VKSPGA-----VRGIS 396
YQ L+M LPVS A +S + GW+ W DDWDD + P +S
Sbjct: 276 YQRLDMELPVSNPALVTKSDQESGDDGWNNNWGDDWDDENGGGDEEQPNTPVLPLTPSLS 335
Query: 395 ANGLTSRSANKDGW 354
+ GL R +K+GW
Sbjct: 336 SRGLAPRRLSKEGW 349
>pir||T04997 hypothetical protein T16L1.290 - Arabidopsis thaliana
gi|3549682|emb|CAA20593.1| hypothetical protein
[Arabidopsis thaliana] gi|7270329|emb|CAB80097.1|
hypothetical protein [Arabidopsis thaliana]
Length = 158
Score = 37.4 bits (85), Expect = 0.12
Identities = 18/47 (38%), Positives = 25/47 (52%)
Frame = -1
Query: 482 SAEGWDQGWDDDWDDNVAVKSPGAVRGISANGLTSRSANKDGWDNNW 342
S+ G + GW D +V+ SP R +NG SR +KD WD N+
Sbjct: 4 SSSGCESGWTLYLDQSVSSPSPSCFR--DSNGFDSRRRSKDSWDQNY 48
>ref|NP_567937.1| expressed protein; protein id: At4g33800.1, supported by cDNA:
6375. [Arabidopsis thaliana] gi|21594003|gb|AAM65921.1|
unknown [Arabidopsis thaliana]
Length = 170
Score = 37.4 bits (85), Expect = 0.12
Identities = 18/47 (38%), Positives = 25/47 (52%)
Frame = -1
Query: 482 SAEGWDQGWDDDWDDNVAVKSPGAVRGISANGLTSRSANKDGWDNNW 342
S+ G + GW D +V+ SP R +NG SR +KD WD N+
Sbjct: 4 SSSGCESGWTLYLDQSVSSPSPSCFR--DSNGFDSRRRSKDSWDQNY 48
>gb|AAA32051.1| cytochrome P450 [Romanomermis culicivorax]
Length = 239
Score = 33.1 bits (74), Expect = 2.3
Identities = 27/92 (29%), Positives = 37/92 (39%)
Frame = +2
Query: 218 FLLSLAHHSTFVTSLLNCSPNL*G*NPSSFIIYIAC*LTIHPSYYPIHLCLQI*K*GHLP 397
F SL+HH F +L P SF+I + L +P Y+ + I G
Sbjct: 104 FFSSLSHH--FKMNL-----------PVSFLISVFMLLIFNPEYFKSKILSSIVGQGSYL 150
Query: 398 RCHALLPVTSPPRCHPNHHPIPDPNLQQIPHW 493
C + SP HPN+ +PN PHW
Sbjct: 151 MCTTFIGA-SPSEAHPNYSQFGNPN---NPHW 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,212,354
Number of Sequences: 1393205
Number of extensions: 10485048
Number of successful extensions: 31694
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 28806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30868
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
