Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003050A_C03 KMC003050A_c03
(712 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65510.1| 60S ribosomal protein L4-B (L1) [Arabidopsis thal... 228 8e-59
ref|NP_187574.1| putative 60S ribosomal protein L1; protein id: ... 228 8e-59
ref|NP_195907.1| 60S ribosomal protein - like; protein id: At5g0... 223 3e-57
gb|AAK32901.1|AF367314_1 AT5g02870/F9G14_180 [Arabidopsis thalia... 223 3e-57
dbj|BAC42280.1| putative 60S ribosomal protein [Arabidopsis thal... 220 1e-56
>gb|AAM65510.1| 60S ribosomal protein L4-B (L1) [Arabidopsis thaliana]
Length = 406
Score = 228 bits (580), Expect = 8e-59
Identities = 116/145 (80%), Positives = 129/145 (88%)
Frame = -2
Query: 711 FEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIKKDVKRATLKK 532
FEKL+SIYGSF+KPSEKKKGY+LPR+KMVN+DLARIINSDE+QSVV PIKKD KRA LKK
Sbjct: 263 FEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKK 322
Query: 531 NPLKNLNLMLRLNPYAKTAKRAALLAEAQRLQAKKEKLDKKRKIVSKEEASAIKAAGKGL 352
NPLKNLN+ML+LNPYAKTAKR +LLAEAQR++AKKEKL KKRK V+KEEA AIKAAGK
Sbjct: 323 NPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSW 382
Query: 351 VSAPWCSDSDYTEFDNFSKWLGVSQ 277
SDSDYTEFDNF+KWLG SQ
Sbjct: 383 YKT-MISDSDYTEFDNFTKWLGASQ 406
>ref|NP_187574.1| putative 60S ribosomal protein L1; protein id: At3g09630.1,
supported by cDNA: 39947., supported by cDNA:
gi_15982714 [Arabidopsis thaliana]
gi|17369604|sp|Q9SF40|RL4B_ARATH 60S ribosomal protein
L4-2 (L1) gi|6682241|gb|AAF23293.1|AC016661_18 putative
60S ribosomal protein L1 [Arabidopsis thaliana]
gi|15982715|gb|AAL09727.1| AT3g09630/F11F8_22
[Arabidopsis thaliana] gi|27311665|gb|AAO00798.1|
putative 60S ribosomal protein L1 [Arabidopsis thaliana]
Length = 406
Score = 228 bits (580), Expect = 8e-59
Identities = 116/145 (80%), Positives = 129/145 (88%)
Frame = -2
Query: 711 FEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIKKDVKRATLKK 532
FEKL+SIYGSF+KPSEKKKGY+LPR+KMVN+DLARIINSDE+QSVV PIKKD KRA LKK
Sbjct: 263 FEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKK 322
Query: 531 NPLKNLNLMLRLNPYAKTAKRAALLAEAQRLQAKKEKLDKKRKIVSKEEASAIKAAGKGL 352
NPLKNLN+ML+LNPYAKTAKR +LLAEAQR++AKKEKL KKRK V+KEEA AIKAAGK
Sbjct: 323 NPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSW 382
Query: 351 VSAPWCSDSDYTEFDNFSKWLGVSQ 277
SDSDYTEFDNF+KWLG SQ
Sbjct: 383 YKT-MISDSDYTEFDNFTKWLGASQ 406
>ref|NP_195907.1| 60S ribosomal protein - like; protein id: At5g02870.1, supported by
cDNA: gi_13605830, supported by cDNA: gi_15450797,
supported by cDNA: gi_16649032, supported by cDNA:
gi_17064751, supported by cDNA: gi_20260071 [Arabidopsis
thaliana] gi|20143905|sp|P49691|RL4A_ARATH 60S ribosomal
protein L4-1 (L1) gi|11276668|pir||T48308 60S ribosomal
protein-like - Arabidopsis thaliana
gi|7413562|emb|CAB86041.1| 60S ribosomal protein-like
[Arabidopsis thaliana] gi|15450798|gb|AAK96670.1| 60S
ribosomal protein-like [Arabidopsis thaliana]
gi|16649033|gb|AAL24368.1| 60S ribosomal protein-like
[Arabidopsis thaliana] gi|17064752|gb|AAL32530.1| 60S
ribosomal protein-like [Arabidopsis thaliana]
gi|20260072|gb|AAM13383.1| 60S ribosomal protein-like
[Arabidopsis thaliana] gi|21387109|gb|AAM47958.1| 60S
ribosomal protein-like protein [Arabidopsis thaliana]
gi|22530964|gb|AAM96986.1| 60S ribosomal protein-like
[Arabidopsis thaliana] gi|25083642|gb|AAN72099.1| 60S
ribosomal protein-like [Arabidopsis thaliana]
Length = 407
Score = 223 bits (567), Expect = 3e-57
Identities = 113/145 (77%), Positives = 127/145 (86%)
Frame = -2
Query: 711 FEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIKKDVKRATLKK 532
FEKL+SIYGSF+KPSEKKKGY+LPR+KMVN+DLARIINSDEVQSVV PIK KRA LKK
Sbjct: 264 FEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKK 323
Query: 531 NPLKNLNLMLRLNPYAKTAKRAALLAEAQRLQAKKEKLDKKRKIVSKEEASAIKAAGKGL 352
NPLKNLN+M +LNPYAKTAKR +LLAEA R++AKKEKL+KKRK+V+KEEA AIKAAGK
Sbjct: 324 NPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAW 383
Query: 351 VSAPWCSDSDYTEFDNFSKWLGVSQ 277
SDSDYTEFDNF+KWLG SQ
Sbjct: 384 YQT-MISDSDYTEFDNFTKWLGASQ 407
>gb|AAK32901.1|AF367314_1 AT5g02870/F9G14_180 [Arabidopsis thaliana]
gi|22137186|gb|AAM91438.1| AT5g02870/F9G14_180
[Arabidopsis thaliana]
Length = 307
Score = 223 bits (567), Expect = 3e-57
Identities = 113/145 (77%), Positives = 127/145 (86%)
Frame = -2
Query: 711 FEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIKKDVKRATLKK 532
FEKL+SIYGSF+KPSEKKKGY+LPR+KMVN+DLARIINSDEVQSVV PIK KRA LKK
Sbjct: 164 FEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKK 223
Query: 531 NPLKNLNLMLRLNPYAKTAKRAALLAEAQRLQAKKEKLDKKRKIVSKEEASAIKAAGKGL 352
NPLKNLN+M +LNPYAKTAKR +LLAEA R++AKKEKL+KKRK+V+KEEA AIKAAGK
Sbjct: 224 NPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAW 283
Query: 351 VSAPWCSDSDYTEFDNFSKWLGVSQ 277
SDSDYTEFDNF+KWLG SQ
Sbjct: 284 YQT-MISDSDYTEFDNFTKWLGASQ 307
>dbj|BAC42280.1| putative 60S ribosomal protein [Arabidopsis thaliana]
Length = 407
Score = 220 bits (561), Expect = 1e-56
Identities = 112/145 (77%), Positives = 126/145 (86%)
Frame = -2
Query: 711 FEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIKKDVKRATLKK 532
FEKL+SIYGSF+KPSEKKKGY+LPR+KMVN+DLARIINSDEVQSVV PIK KRA LKK
Sbjct: 264 FEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKK 323
Query: 531 NPLKNLNLMLRLNPYAKTAKRAALLAEAQRLQAKKEKLDKKRKIVSKEEASAIKAAGKGL 352
NPLKNLN+M +LNPYAKTAKR +LLAEA R++AKKE L+KKRK+V+KEEA AIKAAGK
Sbjct: 324 NPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEMLEKKRKVVTKEEAQAIKAAGKAW 383
Query: 351 VSAPWCSDSDYTEFDNFSKWLGVSQ 277
SDSDYTEFDNF+KWLG SQ
Sbjct: 384 YQT-MISDSDYTEFDNFTKWLGASQ 407
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,950,916
Number of Sequences: 1393205
Number of extensions: 11846619
Number of successful extensions: 39576
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 37368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39425
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
