Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003049A_C01 KMC003049A_c01
(401 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_389433.1| dihydroorotase [Bacillus subtilis] gi|131715|sp... 31 3.2
emb|CAC37563.1| von Willebrand Factor [Calomyscus mystax] 30 5.5
ref|NP_568418.1| expressed protein; protein id: At5g22430.1, sup... 30 5.5
gb|AAK21902.1|AF335329_1 alpha-aminoadipyl-cysteinyl-valine synt... 30 7.2
pir||T51459 hypothetical protein K10A8_30 - Arabidopsis thaliana... 30 7.2
>ref|NP_389433.1| dihydroorotase [Bacillus subtilis] gi|131715|sp|P25995|PYRC_BACSU
Dihydroorotase (DHOase) gi|279573|pir||DEBSO
dihydroorotase (EC 3.5.2.3) - Bacillus subtilis
gi|143388|gb|AAA21268.1| dihydroorotase [Bacillus
subtilis] gi|2633923|emb|CAB13424.1| dihydroorotase
[Bacillus subtilis subsp. subtilis str. 168]
Length = 428
Score = 31.2 bits (69), Expect = 3.2
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -2
Query: 280 DDIMDMTLDFYNKSHSSAFHYSRRRERRL*RIKRLRLRGSLT*TLKVATMKWYLQME 110
+ ++D T+DF H+ + E +L + RLR S+ +L KW L E
Sbjct: 290 EGLLDGTIDFIATDHAPHTEEEKNTEMKLAPFRNCRLRNSIPASLHTLCQKWQLVTE 346
>emb|CAC37563.1| von Willebrand Factor [Calomyscus mystax]
Length = 380
Score = 30.4 bits (67), Expect = 5.5
Identities = 18/47 (38%), Positives = 25/47 (52%)
Frame = +1
Query: 1 VVWVVNRE*YYSGSRVKHETGQKSYTLYESIWDSISAPSADTISWLL 141
VVW + + Y+GS V + YTLY+ I+ I P A I+ LL
Sbjct: 89 VVWRIASQVKYAGSHVASTSEVLKYTLYQ-IFGKIDRPEASRITLLL 134
>ref|NP_568418.1| expressed protein; protein id: At5g22430.1, supported by cDNA:
6519., supported by cDNA: gi_13877904, supported by
cDNA: gi_16323437 [Arabidopsis thaliana]
gi|9757824|dbj|BAB08342.1| gene_id:MWD9.23~unknown
protein [Arabidopsis thaliana]
gi|13877905|gb|AAK44030.1|AF370215_1 unknown protein
[Arabidopsis thaliana] gi|16323438|gb|AAL15213.1|
unknown protein [Arabidopsis thaliana]
Length = 172
Score = 30.4 bits (67), Expect = 5.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 196 IFSLSSLSNGKLSYDSYYKNRVSCPLCHRDCLYS 297
+F+L+ SN +LS S ++SC CHRD +S
Sbjct: 12 LFALAVFSNLELSASSLVSGKISCLDCHRDFDFS 45
>gb|AAK21902.1|AF335329_1 alpha-aminoadipyl-cysteinyl-valine synthetase [Kallichroma tethys]
Length = 3734
Score = 30.0 bits (66), Expect = 7.2
Identities = 27/85 (31%), Positives = 40/85 (46%), Gaps = 4/85 (4%)
Frame = +1
Query: 133 WLLPLMFKSNSPSILGV*SSIIFSLSSLSNGKLSY--DSYYKNRVSCPLCHRDCLYSYFP 306
W LPL+F+ S LG ++ ++S S LSY Y R HRD S++
Sbjct: 1074 WSLPLLFEDVHDSYLG----LLDGVASASPVDLSYIHSQQYLQR------HRDHHLSFWS 1123
Query: 307 CKFDKAKLNSDN*AL--DASRVPDP 375
C+ D+ + D AL ++SR P
Sbjct: 1124 CQLDQVEERCDMNALLNESSRYKVP 1148
>pir||T51459 hypothetical protein K10A8_30 - Arabidopsis thaliana
gi|9755780|emb|CAC01899.1| putative protein [Arabidopsis
thaliana]
Length = 274
Score = 30.0 bits (66), Expect = 7.2
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = -2
Query: 367 ALSKHPELSCLNST----LLCQIYMENMNRDSHDDIMDMTLD 254
A+ +PEL LN+T L+ + +ENM D+H D +D LD
Sbjct: 3 AVGSNPELDQLNNTAFGNLVEEERLENMANDTHTDDLDELLD 44
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 326,452,470
Number of Sequences: 1393205
Number of extensions: 6112611
Number of successful extensions: 16084
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16082
length of database: 448,689,247
effective HSP length: 109
effective length of database: 296,829,902
effective search space used: 7123917648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
