Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003048A_C02 KMC003048A_c02
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_569015.1| putative protein; protein id: At5g65650.1, supp... 138 5e-32
ref|NP_195384.1| hypothetical protein; protein id: At4g36660.1 [... 125 4e-28
gb|AAG01119.1|AF273333_4 BAC19.4 [Lycopersicon esculentum] 108 4e-23
gb|AAO37508.1| unknown protein [Oryza sativa (japonica cultivar-... 91 2e-17
ref|NP_173371.1| hypothetical protein; protein id: At1g19380.1 [... 85 7e-16
>ref|NP_569015.1| putative protein; protein id: At5g65650.1, supported by cDNA:
118150. [Arabidopsis thaliana]
gi|21537019|gb|AAM61360.1| unknown [Arabidopsis
thaliana] gi|27754375|gb|AAO22636.1| unknown protein
[Arabidopsis thaliana] gi|28394067|gb|AAO42441.1|
unknown protein [Arabidopsis thaliana]
Length = 185
Score = 138 bits (348), Expect = 5e-32
Identities = 65/95 (68%), Positives = 78/95 (81%)
Frame = -3
Query: 621 LEMEEREKVVRHMWDVYTHSRRIRLPRFWQEAFEAAYEELTSDAPGVRDAAITEIAKMSV 442
LEMEEREKVV+HMWDVY + RRIRLPRFWQEAFEAAYEELTSD P V +AAI+EIA+MS+
Sbjct: 84 LEMEEREKVVKHMWDVYNNGRRIRLPRFWQEAFEAAYEELTSDVPDVVEAAISEIARMSI 143
Query: 441 RSIDFDPPPIQSTRAQEFSKSLKQVEKGKGATTSR 337
RSI DPPP+ ST +E +K+LK +KG+ S+
Sbjct: 144 RSIVIDPPPLHSTNVRELTKTLKLADKGRATQISK 178
>ref|NP_195384.1| hypothetical protein; protein id: At4g36660.1 [Arabidopsis
thaliana] gi|25372661|pir||H85432 hypothetical protein
AT4g36660 [imported] - Arabidopsis thaliana
gi|2464914|emb|CAB16809.1| hypothetical protein
[Arabidopsis thaliana] gi|7270614|emb|CAB80332.1|
hypothetical protein [Arabidopsis thaliana]
Length = 159
Score = 125 bits (314), Expect = 4e-28
Identities = 60/72 (83%), Positives = 65/72 (89%)
Frame = -3
Query: 621 LEMEEREKVVRHMWDVYTHSRRIRLPRFWQEAFEAAYEELTSDAPGVRDAAITEIAKMSV 442
LEMEEREKVV+HMWDVYT+SRRI+LPRFWQEAF AAYEELTSD PGVR+AAI EIAKMS
Sbjct: 87 LEMEEREKVVKHMWDVYTNSRRIKLPRFWQEAFVAAYEELTSDVPGVREAAIGEIAKMSA 146
Query: 441 RSIDFDPPPIQS 406
RSI DPPP +S
Sbjct: 147 RSITLDPPPSRS 158
>gb|AAG01119.1|AF273333_4 BAC19.4 [Lycopersicon esculentum]
Length = 182
Score = 108 bits (271), Expect = 4e-23
Identities = 51/73 (69%), Positives = 62/73 (84%)
Frame = -3
Query: 621 LEMEEREKVVRHMWDVYTHSRRIRLPRFWQEAFEAAYEELTSDAPGVRDAAITEIAKMSV 442
LEMEEREK+V+HMWDVYT+SR I+L +FWQEAFEAAYEEL SD PGV + A++EIAKMSV
Sbjct: 84 LEMEEREKLVKHMWDVYTNSRGIKLLKFWQEAFEAAYEELASDVPGVPEDALSEIAKMSV 143
Query: 441 RSIDFDPPPIQST 403
R I + PP+ S+
Sbjct: 144 RYIPIESPPLHSS 156
>gb|AAO37508.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 178
Score = 90.5 bits (223), Expect = 2e-17
Identities = 47/80 (58%), Positives = 58/80 (71%), Gaps = 3/80 (3%)
Frame = -3
Query: 621 LEMEEREKVVRHMWDVYTHSR-RIRLPRFWQEAFEAAYEELTSDAPGVRDAAITEIAKMS 445
LEMEEREK+V MWD+YT + +RLPRFWQEAFEAAYEEL D VRDAAI+EIA+MS
Sbjct: 91 LEMEEREKLVGRMWDMYTRTGDEVRLPRFWQEAFEAAYEELAGDDMQVRDAAISEIARMS 150
Query: 444 VRSIDFDPP--PIQSTRAQE 391
++ + P + TR+ E
Sbjct: 151 AHRLELEQPVNEEEKTRSNE 170
>ref|NP_173371.1| hypothetical protein; protein id: At1g19380.1 [Arabidopsis
thaliana] gi|8778415|gb|AAF79423.1|AC025808_5 F18O14.10
[Arabidopsis thaliana]
Length = 147
Score = 85.1 bits (209), Expect = 7e-16
Identities = 39/60 (65%), Positives = 51/60 (85%)
Frame = -3
Query: 621 LEMEEREKVVRHMWDVYTHSRRIRLPRFWQEAFEAAYEELTSDAPGVRDAAITEIAKMSV 442
LE+EEREKVVR MWDVY S +++PRFW+EAFEAAYE L SD+ VR+AA+++IAK+S+
Sbjct: 72 LEIEEREKVVRQMWDVYGRSGGVKVPRFWREAFEAAYEFLISDSAAVRNAAVSDIAKLSL 131
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,303,722
Number of Sequences: 1393205
Number of extensions: 11613386
Number of successful extensions: 46487
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 44744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46442
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
