Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003041A_C01 KMC003041A_c01
(478 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90170.1| P0408G07.16 [Oryza sativa (japonica cultivar-gro... 35 0.41
ref|NP_541157.1| RRF2 FAMILY PROTEIN [Brucella melitensis] gi|25... 32 2.7
>dbj|BAB90170.1| P0408G07.16 [Oryza sativa (japonica cultivar-group)]
gi|21328045|dbj|BAC00630.1| P0434C04.5 [Oryza sativa
(japonica cultivar-group)]
Length = 245
Score = 35.0 bits (79), Expect = 0.41
Identities = 15/17 (88%), Positives = 17/17 (99%)
Frame = -2
Query: 477 SLSPFNSTGMKRAQTGR 427
S+SPFNSTGMKRA+TGR
Sbjct: 229 SVSPFNSTGMKRAKTGR 245
>ref|NP_541157.1| RRF2 FAMILY PROTEIN [Brucella melitensis] gi|25525210|pir||AB3532
rrf2 family protein BMEII0180 [imported] - Brucella
melitensis (strain 16M) gi|17984317|gb|AAL53421.1| RRF2
FAMILY PROTEIN [Brucella melitensis 16M]
Length = 162
Score = 32.3 bits (72), Expect = 2.7
Identities = 16/53 (30%), Positives = 26/53 (48%)
Frame = -1
Query: 385 FKLLEFGGGLFTPYTLSGLNLLEHLPRMTDGSLTAILWCINRHHLDSHFVEVI 227
F+ + GG+ T GL + HL +TDG L + +HH+ F++ I
Sbjct: 11 FREMPCRGGMLTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNI 63
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,363,007
Number of Sequences: 1393205
Number of extensions: 8198905
Number of successful extensions: 15911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15910
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
