Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003022A_C01 KMC003022A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05841 spliceosome-associated protein homolog F17L22.120 - ... 48 7e-05
gb|AAN72024.1| spliceosome associated protein - like [Arabidopsi... 48 7e-05
ref|NP_193897.1| spliceosome associated protein - like; protein ... 48 7e-05
pir||T50989 hypothetical protein B7F18.80 [imported] - Neurospor... 36 0.27
emb|CAD11800.1| conserved hypothetical protein [Neurospora crass... 36 0.27
>pir||T05841 spliceosome-associated protein homolog F17L22.120 - Arabidopsis
thaliana gi|4455274|emb|CAB36810.1| spliceosome
associated protein-like [Arabidopsis thaliana]
gi|7268963|emb|CAB81273.1| spliceosome associated
protein-like [Arabidopsis thaliana]
Length = 700
Score = 48.1 bits (113), Expect = 7e-05
Identities = 20/34 (58%), Positives = 26/34 (75%)
Frame = -2
Query: 528 GMPEGAPSNYEEEPVFNTKHWGDLEEKDEEEELE 427
G+ + NYEEEP+ +KHWGDLEE++EEEE E
Sbjct: 462 GVQQQDQPNYEEEPIDKSKHWGDLEEEEEEEEEE 495
>gb|AAN72024.1| spliceosome associated protein - like [Arabidopsis thaliana]
Length = 584
Score = 48.1 bits (113), Expect = 7e-05
Identities = 20/34 (58%), Positives = 26/34 (75%)
Frame = -2
Query: 528 GMPEGAPSNYEEEPVFNTKHWGDLEEKDEEEELE 427
G+ + NYEEEP+ +KHWGDLEE++EEEE E
Sbjct: 386 GVQQQDQPNYEEEPIDKSKHWGDLEEEEEEEEEE 419
Score = 37.4 bits (85), Expect = 0.12
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Frame = -2
Query: 444 EEEELEAGTYVFNLSRYEKPRPEEKLRSQ--RFSDTVAEN--EKKRKRTMQEKEVGKWRK 277
+ EEL+A V ++YE+ R EEKLR++ SD V E+ + RKR M +KE GK +K
Sbjct: 523 QPEELDAMENVLP-AKYEEAREEEKLRNKPVDLSDMVVEHVQQNSRKRKMHDKE-GK-KK 579
Query: 276 KDF 268
KDF
Sbjct: 580 KDF 582
>ref|NP_193897.1| spliceosome associated protein - like; protein id: At4g21660.1
[Arabidopsis thaliana]
Length = 669
Score = 48.1 bits (113), Expect = 7e-05
Identities = 20/34 (58%), Positives = 26/34 (75%)
Frame = -2
Query: 528 GMPEGAPSNYEEEPVFNTKHWGDLEEKDEEEELE 427
G+ + NYEEEP+ +KHWGDLEE++EEEE E
Sbjct: 462 GVQQQDQPNYEEEPIDKSKHWGDLEEEEEEEEEE 495
Score = 37.4 bits (85), Expect = 0.12
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Frame = -2
Query: 444 EEEELEAGTYVFNLSRYEKPRPEEKLRSQ--RFSDTVAEN--EKKRKRTMQEKEVGKWRK 277
+ EEL+A V ++YE+ R EEKLR++ SD V E+ + RKR M +KE GK +K
Sbjct: 608 QPEELDAMENVLP-AKYEEAREEEKLRNKPVDLSDMVVEHVQQNSRKRKMHDKE-GK-KK 664
Query: 276 KDF 268
KDF
Sbjct: 665 KDF 667
>pir||T50989 hypothetical protein B7F18.80 [imported] - Neurospora crassa
Length = 729
Score = 36.2 bits (82), Expect = 0.27
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Frame = -2
Query: 513 APSNYEEEPVFNTKHWGDLEEKDEEEE-----------LEAGTYVFNLSRYEKPRPEEKL 367
A + EEE + K + E++EEEE L + R EK + EE+
Sbjct: 427 AAAREEEEKLIRAKERLERLEREEEEERKQKKLEEELELRKAKEELDRMRREKEKKEEEE 486
Query: 366 RSQRF-------SDTVAENEKKRKRTMQEKEVGKWRKKD 271
R +R + AE E+KRK+ +E V +W+ K+
Sbjct: 487 RLRREYELKRLEEERKAEEERKRKQEEEEAAVARWKAKE 525
>emb|CAD11800.1| conserved hypothetical protein [Neurospora crassa]
gi|28927167|gb|EAA36123.1| hypothetical protein
[Neurospora crassa]
Length = 763
Score = 36.2 bits (82), Expect = 0.27
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Frame = -2
Query: 513 APSNYEEEPVFNTKHWGDLEEKDEEEE-----------LEAGTYVFNLSRYEKPRPEEKL 367
A + EEE + K + E++EEEE L + R EK + EE+
Sbjct: 461 AAAREEEEKLIRAKERLERLEREEEEERKQKKLEEELELRKAKEELDRMRREKEKKEEEE 520
Query: 366 RSQRF-------SDTVAENEKKRKRTMQEKEVGKWRKKD 271
R +R + AE E+KRK+ +E V +W+ K+
Sbjct: 521 RLRREYELKRLEEERKAEEERKRKQEEEEAAVARWKAKE 559
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,374,204
Number of Sequences: 1393205
Number of extensions: 11169625
Number of successful extensions: 44783
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 37778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42735
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
