Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003006A_C01 KMC003006A_c01
(888 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC84708.1| aux/IAA protein [Populus tremula x Populus tremu... 176 4e-43
emb|CAC84707.1| aux/IAA protein [Populus tremula x Populus tremu... 168 9e-41
ref|NP_188387.1| putative auxin-induced protein; protein id: At3... 144 1e-33
gb|AAN18112.1| At3g17600/MKP6_15 [Arabidopsis thaliana] 142 7e-33
dbj|BAA95840.1| unnamed protein product [Oryza sativa (japonica ... 125 1e-27
>emb|CAC84708.1| aux/IAA protein [Populus tremula x Populus tremuloides]
Length = 176
Score = 176 bits (446), Expect = 4e-43
Identities = 96/184 (52%), Positives = 121/184 (65%)
Frame = -3
Query: 835 SSSSSSSSIDSNNLPKPPPPPPSSSSSLCLSSVCRRNRTDLSTDLKLGLSISHSSQSESA 656
++SSSSSS +S+N P S S+ LS + + DLSTDL+LGLSIS S Q
Sbjct: 5 ATSSSSSSFESSNYP-------SVSTKSSLSQL----KKDLSTDLRLGLSISASQQENP- 52
Query: 655 YNSTPPREETFDWPPIKSTLRSTLVEKQNHRSQTPSLFVKVYMEGIPIGRKLNLLEHHSY 476
STP ++ DWPPIK S +E + + + + FVKVYMEGIPIGRKLNLL H Y
Sbjct: 53 --STPSDQQLSDWPPIKPLNLSKALESEENECSSATFFVKVYMEGIPIGRKLNLLAHDGY 110
Query: 475 DGLVKSLAHMLRTIILCPNSQPNHSGNFHVLTYEDQEGEWMMVGDVPWEMFLTSLKRMKI 296
L+++L M T IL P HSG HVLTYED+EG+W++VGDVPWEMFL S++R+KI
Sbjct: 111 HDLIQTLDQMFNTSILWPEMDIEHSGQCHVLTYEDKEGDWLIVGDVPWEMFLPSVRRLKI 170
Query: 295 TRAD 284
TRAD
Sbjct: 171 TRAD 174
>emb|CAC84707.1| aux/IAA protein [Populus tremula x Populus tremuloides]
Length = 174
Score = 168 bits (426), Expect = 9e-41
Identities = 92/184 (50%), Positives = 119/184 (64%)
Frame = -3
Query: 835 SSSSSSSSIDSNNLPKPPPPPPSSSSSLCLSSVCRRNRTDLSTDLKLGLSISHSSQSESA 656
++SSSSSS +S++ P S+ S + + DLSTDL+LGL IS S Q
Sbjct: 5 AASSSSSSFESSSYP-----------SVSGESSFPQGKRDLSTDLRLGLGISTSRQD--- 50
Query: 655 YNSTPPREETFDWPPIKSTLRSTLVEKQNHRSQTPSLFVKVYMEGIPIGRKLNLLEHHSY 476
N + P E+ DWPPIK + + ++N S + +LFVKVYMEGI IGRKLNLL H Y
Sbjct: 51 -NPSTPSEQLLDWPPIKPSPGKAVTSEENEYSSS-TLFVKVYMEGIQIGRKLNLLAHDGY 108
Query: 475 DGLVKSLAHMLRTIILCPNSQPNHSGNFHVLTYEDQEGEWMMVGDVPWEMFLTSLKRMKI 296
L+++L M T IL P HSG HVLTYEDQEG+W++VGDVPWE+FL S++R+KI
Sbjct: 109 HDLIQTLDQMFNTSILWPEMDVEHSGKCHVLTYEDQEGDWLIVGDVPWEVFLPSVRRLKI 168
Query: 295 TRAD 284
TRAD
Sbjct: 169 TRAD 172
>ref|NP_188387.1| putative auxin-induced protein; protein id: At3g17600.1, supported
by cDNA: gi_15810011 [Arabidopsis thaliana]
gi|9294148|dbj|BAB02050.1| contains similarity to
auxin-induced protein (IAA20)~gene_id:MKP6.16
[Arabidopsis thaliana] gi|15810012|gb|AAL06933.1|
AT3g17600/MKP6_15 [Arabidopsis thaliana]
Length = 158
Score = 144 bits (364), Expect = 1e-33
Identities = 85/185 (45%), Positives = 109/185 (57%), Gaps = 1/185 (0%)
Frame = -3
Query: 832 SSSSSSSIDSNNLPKPPPPPPSSSSSLCLSSVCRRNRTDLSTDLKLGLSISHSSQSESAY 653
SS SSSS+DS P PS SS + L LS++ S S
Sbjct: 8 SSFSSSSVDSTK------PSPSESS------------------VNLSLSLTFPSTS---- 39
Query: 652 NSTPPREETFDWPPIKSTLRSTLVEKQN-HRSQTPSLFVKVYMEGIPIGRKLNLLEHHSY 476
P RE DWPPIKS LR TL ++ R SLFVKVYMEG+PIGRKL+L Y
Sbjct: 40 ---PQREARQDWPPIKSRLRDTLKGRRLLRRGDDTSLFVKVYMEGVPIGRKLDLCVFSGY 96
Query: 475 DGLVKSLAHMLRTIILCPNSQPNHSGNFHVLTYEDQEGEWMMVGDVPWEMFLTSLKRMKI 296
+ L+++L+HM T I+C N H HVLTYED++G+WMMVGD+PW+MFL +++R+KI
Sbjct: 97 ESLLENLSHMFDTSIICGNRDRKH----HVLTYEDKDGDWMMVGDIPWDMFLETVRRLKI 152
Query: 295 TRADR 281
TR +R
Sbjct: 153 TRPER 157
>gb|AAN18112.1| At3g17600/MKP6_15 [Arabidopsis thaliana]
Length = 158
Score = 142 bits (358), Expect = 7e-33
Identities = 84/185 (45%), Positives = 108/185 (57%), Gaps = 1/185 (0%)
Frame = -3
Query: 832 SSSSSSSIDSNNLPKPPPPPPSSSSSLCLSSVCRRNRTDLSTDLKLGLSISHSSQSESAY 653
SS SSSS+DS P PS SS + L LS++ S S
Sbjct: 8 SSFSSSSVDSTK------PSPSESS------------------VNLSLSLTFPSTS---- 39
Query: 652 NSTPPREETFDWPPIKSTLRSTLVEKQN-HRSQTPSLFVKVYMEGIPIGRKLNLLEHHSY 476
P RE DWPPIKS LR TL ++ R SLFVKVYMEG+PIGRKL+L Y
Sbjct: 40 ---PQREARQDWPPIKSRLRDTLKGRRLLRRGDDTSLFVKVYMEGVPIGRKLDLCVFSGY 96
Query: 475 DGLVKSLAHMLRTIILCPNSQPNHSGNFHVLTYEDQEGEWMMVGDVPWEMFLTSLKRMKI 296
+ L+++L+HM T I+C N H HVLTYED++G+WMMVGD+PW+MFL +++R+KI
Sbjct: 97 ESLLENLSHMFDTSIICGNRDRKH----HVLTYEDKDGDWMMVGDIPWDMFLETVRRLKI 152
Query: 295 TRADR 281
R +R
Sbjct: 153 PRPER 157
>dbj|BAA95840.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 189
Score = 125 bits (313), Expect = 1e-27
Identities = 82/189 (43%), Positives = 102/189 (53%), Gaps = 23/189 (12%)
Frame = -3
Query: 826 SSSSSIDSNNLPKPPPPPPSSSSSLCLSSVCRRNRTDLSTDLKLGLSISHSSQS------ 665
S SSS+DS+ P +L +S R DLSTDL+LGLS+S SS S
Sbjct: 10 SPSSSMDSSTHP-----------ALSTTSSAATARRDLSTDLRLGLSLSTSSSSSLLQAA 58
Query: 664 ------ESAYNSTPPREETF-DWPPIKSTLRSTLVEKQ----NHRSQTPSLFVKVYMEGI 518
+ + STP + DWPPIK LRS L + + +LFVKVYMEG+
Sbjct: 59 AAAAAADDSIPSTPRNSQVHADWPPIKPFLRSALQKASAAGGGGARRRRTLFVKVYMEGV 118
Query: 517 PIGRKLNLLEHHSYDGLVKSLAHMLRT------IILCPNSQPNHSGNFHVLTYEDQEGEW 356
PIGRKL+LL YD L+ L HM +T ++ C P HVLTYEDQ+G+W
Sbjct: 119 PIGRKLDLLLLDGYDSLLIKLCHMFKTPITYADVMECHQQVPGQKA-AHVLTYEDQDGDW 177
Query: 355 MMVGDVPWE 329
MMVGDVPWE
Sbjct: 178 MMVGDVPWE 186
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 781,382,952
Number of Sequences: 1393205
Number of extensions: 18047997
Number of successful extensions: 161616
Number of sequences better than 10.0: 490
Number of HSP's better than 10.0 without gapping: 89436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136176
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 48218255001
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
