Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002995A_C01 KMC002995A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL07016.1| unknown protein [Arabidopsis thaliana] 129 3e-29
ref|NP_566722.1| expressed protein; protein id: At3g23080.1, sup... 129 3e-29
pir||C71407 hypothetical protein - Arabidopsis thaliana gi|22448... 127 1e-28
ref|NP_567433.1| expressed protein; protein id: At4g14500.1, sup... 127 1e-28
dbj|BAC24890.1| OJ1046_F10.28 [Oryza sativa (japonica cultivar-g... 101 5e-21
>gb|AAL07016.1| unknown protein [Arabidopsis thaliana]
Length = 419
Score = 129 bits (323), Expect = 3e-29
Identities = 72/121 (59%), Positives = 85/121 (69%), Gaps = 3/121 (2%)
Frame = -2
Query: 553 KDVAKLGVRHGMWGAVKKLHSGMRAYQNARKADASLSRCALMASETTKMPSDRIMHSSEP 374
KDVAKLGVRHGMWGAVKKL+SG+RAYQ+ARK SLSR A MAS TTK+ D + S
Sbjct: 304 KDVAKLGVRHGMWGAVKKLNSGLRAYQSARKPGTSLSRSAQMASITTKLNMDLVETSGAE 363
Query: 373 ASCEEENVRTVSNTAHKGN---GIDWKWVAVGGTFALVLGVHGGAVGRALVLGAGHRFAR 203
+EE R V N A K N G+DWKW+ VGG AL G+H A+G+AL++GAG R AR
Sbjct: 364 ---DEERGRAVEN-ARKQNDQFGVDWKWIVVGGV-ALACGLHSSAIGKALMVGAGQRLAR 418
Query: 202 R 200
R
Sbjct: 419 R 419
>ref|NP_566722.1| expressed protein; protein id: At3g23080.1, supported by cDNA:
gi_15810256 [Arabidopsis thaliana]
gi|9294197|dbj|BAB02099.1| membrane related protein-like
[Arabidopsis thaliana] gi|23297764|gb|AAN13021.1|
unknown protein [Arabidopsis thaliana]
Length = 419
Score = 129 bits (323), Expect = 3e-29
Identities = 72/121 (59%), Positives = 85/121 (69%), Gaps = 3/121 (2%)
Frame = -2
Query: 553 KDVAKLGVRHGMWGAVKKLHSGMRAYQNARKADASLSRCALMASETTKMPSDRIMHSSEP 374
KDVAKLGVRHGMWGAVKKL+SG+RAYQ+ARK SLSR A MAS TTK+ D + S
Sbjct: 304 KDVAKLGVRHGMWGAVKKLNSGLRAYQSARKPGTSLSRSAQMASITTKLNMDLVETSGAE 363
Query: 373 ASCEEENVRTVSNTAHKGN---GIDWKWVAVGGTFALVLGVHGGAVGRALVLGAGHRFAR 203
+EE R V N A K N G+DWKW+ VGG AL G+H A+G+AL++GAG R AR
Sbjct: 364 ---DEERGRAVEN-ARKQNDQFGVDWKWIVVGGV-ALACGLHSSAIGKALMVGAGQRLAR 418
Query: 202 R 200
R
Sbjct: 419 R 419
>pir||C71407 hypothetical protein - Arabidopsis thaliana
gi|2244806|emb|CAB10229.1| hypothetical protein
[Arabidopsis thaliana] gi|7268156|emb|CAB78492.1|
hypothetical protein [Arabidopsis thaliana]
Length = 420
Score = 127 bits (318), Expect = 1e-28
Identities = 68/119 (57%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
Frame = -2
Query: 553 KDVAKLGVRHGMWGAVKKLHSGMRAYQNARKADASLSRCALMASETTKMPSDRIMHSSEP 374
KDVAKLGVRHGMWGAVKKL+SG+RAYQ+ARK+D+SLSR A MA TTK+ D S+E
Sbjct: 307 KDVAKLGVRHGMWGAVKKLNSGLRAYQSARKSDSSLSRIAQMARITTKLNMD----SAES 362
Query: 373 ASCEEENVRTVSNTAHKGN-GIDWKWVAVGGTFALVLGVHGGAVGRALVLGAGHRFARR 200
+S +E+ R + + + +DWKWV VGG AL G+H G +G+AL+ GAG R ARR
Sbjct: 363 SSRDEDRSRAMEYARQRDHLRMDWKWVVVGGV-ALACGLHSGIIGKALLAGAGQRLARR 420
>ref|NP_567433.1| expressed protein; protein id: At4g14500.1, supported by cDNA:
gi_16226250 [Arabidopsis thaliana]
gi|16226251|gb|AAL16115.1|AF428283_1 AT4g14500/dl3290w
[Arabidopsis thaliana] gi|22531042|gb|AAM97025.1|
expressed protein [Arabidopsis thaliana]
Length = 433
Score = 127 bits (318), Expect = 1e-28
Identities = 68/119 (57%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
Frame = -2
Query: 553 KDVAKLGVRHGMWGAVKKLHSGMRAYQNARKADASLSRCALMASETTKMPSDRIMHSSEP 374
KDVAKLGVRHGMWGAVKKL+SG+RAYQ+ARK+D+SLSR A MA TTK+ D S+E
Sbjct: 320 KDVAKLGVRHGMWGAVKKLNSGLRAYQSARKSDSSLSRIAQMARITTKLNMD----SAES 375
Query: 373 ASCEEENVRTVSNTAHKGN-GIDWKWVAVGGTFALVLGVHGGAVGRALVLGAGHRFARR 200
+S +E+ R + + + +DWKWV VGG AL G+H G +G+AL+ GAG R ARR
Sbjct: 376 SSRDEDRSRAMEYARQRDHLRMDWKWVVVGGV-ALACGLHSGIIGKALLAGAGQRLARR 433
>dbj|BAC24890.1| OJ1046_F10.28 [Oryza sativa (japonica cultivar-group)]
Length = 442
Score = 101 bits (252), Expect = 5e-21
Identities = 58/121 (47%), Positives = 70/121 (56%), Gaps = 7/121 (5%)
Frame = -2
Query: 553 KDVAKLGVRHGMWGAVKKLHSGMRAYQNARKADASLSRCALMASETTK-------MPSDR 395
KDVAK+GVRHGMWGAVKK SG RAYQ R + +LSR A+MA TTK P D+
Sbjct: 323 KDVAKVGVRHGMWGAVKKFQSGFRAYQQMRDTENTLSRSAIMARVTTKTSIASSSCPLDQ 382
Query: 394 IMHSSEPASCEEENVRTVSNTAHKGNGIDWKWVAVGGTFALVLGVHGGAVGRALVLGAGH 215
++ E EN R V G DWKWV GG A V ++ G VG+AL++GA
Sbjct: 383 EPSNAAKTIDESENSRAVQ------PGFDWKWVVFGGAVAAVCVLNTGLVGKALLIGAAS 436
Query: 214 R 212
R
Sbjct: 437 R 437
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,209,904
Number of Sequences: 1393205
Number of extensions: 11980088
Number of successful extensions: 43366
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 39515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43179
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
