Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002988A_C01 KMC002988A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S51911 cryptogene protein G5(ND3) - Leishmania tarentolae (... 44 0.001
pir||E22845 hypothetical protein 4 - Trypanosoma brucei mitochon... 42 0.004
ref|NP_050068.1| NH2 terminus uncertain [Leishmania tarentolae] ... 39 0.039
gb|AAC38975.1| NADH dehydrogenase subunit 5 [Bodo saltans] 34 0.078
pir||C30010 hypothetical ORF-6 protein - Leishmania tarentolae m... 38 0.087
>pir||S51911 cryptogene protein G5(ND3) - Leishmania tarentolae (strain LEM125)
Length = 89
Score = 43.9 bits (102), Expect = 0.001
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 5/45 (11%)
Frame = -3
Query: 227 LCFLLVFCFVL---VLSCLLFLVVV--YMSCFLFFLFECFLLLLF 108
LCF ++ CFV+ ++ +LFL+VV Y C LFF++ CF+ LLF
Sbjct: 12 LCFAVLLCFVMFYSIIGLILFLIVVVLYFMCKLFFVWFCFVFLLF 56
>pir||E22845 hypothetical protein 4 - Trypanosoma brucei mitochondrion
Length = 445
Score = 42.4 bits (98), Expect = 0.004
Identities = 25/74 (33%), Positives = 39/74 (51%), Gaps = 12/74 (16%)
Frame = -3
Query: 233 FCLCFLLVFCFVLVLSCLLFLVVV--YMSCFLF----------FLFECFLLLLFVLLSWE 90
F CF L FCF+ + LF++++ Y+ FLF LFE F LLLF+LL
Sbjct: 63 FLFCFTLFFCFLSFDTRFLFIIIIIQYIIIFLFIFINHIIIISILFEIFSLLLFLLLMSS 122
Query: 89 GYSTRLTLILY*YI 48
+ ++ ++ Y Y+
Sbjct: 123 RFGYKILVLWYYYM 136
>ref|NP_050068.1| NH2 terminus uncertain [Leishmania tarentolae] gi|83996|pir||B26696
hypothetical protein 1 (CYb-COII intergenic region) -
Leishmania tarentolae mitochondrion (fragment)
gi|896286|gb|AAA96601.1| NH2 terminus uncertain
Length = 443
Score = 38.9 bits (89), Expect = 0.039
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Frame = -3
Query: 233 FCLCFLLVFCFVLVLSCLLFLVVV--YMSCFLF----------FLFECFLLLLFVLLSWE 90
F CF +FCF+ + +F++++ Y+ F+F LFE F LLLF++L
Sbjct: 61 FLFCFFFLFCFLNFDTRFVFMIIIMQYIIIFMFLHVIHILFISILFELFSLLLFLILISS 120
Query: 89 GYSTRLTLILY*YI 48
+ ++ ++ Y Y+
Sbjct: 121 RFGYKILILWYYYM 134
>gb|AAC38975.1| NADH dehydrogenase subunit 5 [Bodo saltans]
Length = 212
Score = 33.9 bits (76), Expect = 1.3
Identities = 24/62 (38%), Positives = 33/62 (52%), Gaps = 9/62 (14%)
Frame = -3
Query: 248 SPELDFCLCFLLVFCFVLVLSCLLFLVVV-------YMSCFLFFLFECFLL--LLFVLLS 96
S +L L VF FVL ++FL V ++ FL FLF+CF+L LLF+L
Sbjct: 15 SKDLVLIFLALCVFLFVLEFFFVVFLFVFITFWYNYFLLFFLCFLFKCFVLLDLLFLLFD 74
Query: 95 WE 90
+E
Sbjct: 75 FE 76
Score = 32.3 bits (72), Expect(2) = 0.078
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Frame = -3
Query: 236 DFCLC-----FLLVFCFVLVLSCLLFLVVVYMSCFLFFLFECFLLLLF 108
DF LC FL+ CF L+ CL F + F +FL C F
Sbjct: 74 DFELCLLYCLFLMFMCFFLLFCCLDFFLYFVFLGFFYFLMYCLFFFSF 121
Score = 31.6 bits (70), Expect = 6.2
Identities = 22/47 (46%), Positives = 26/47 (54%), Gaps = 3/47 (6%)
Frame = -3
Query: 233 FCLCFLLVFCFVLVLSCLLFLVVVYMSCFL---FFLFECFLLLLFVL 102
F LCFL CFVL+ LLFL+ + C L F +F CF LL L
Sbjct: 54 FFLCFLFK-CFVLL--DLLFLLFDFELCLLYCLFLMFMCFFLLFCCL 97
Score = 24.6 bits (52), Expect(2) = 0.078
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 124 FCCFFSFCSLG 92
FCCFF FC G
Sbjct: 131 FCCFFVFCFYG 141
>pir||C30010 hypothetical ORF-6 protein - Leishmania tarentolae mitochondrion
Length = 245
Score = 37.7 bits (86), Expect = 0.087
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = -3
Query: 239 LDFCLCFLLVF---CFVLVLSCLLFLVVVYMSCFLFFLFECFLLLLFVLLSWEGY----S 81
+ F +C ++ CF+L+ +F + CF+F L FL+L FVL + G+
Sbjct: 83 ISFLMCDIIYIDYICFLLIYFGFIFSFITGFFCFIFVLNYVFLVLFFVLALFFGFLFLSY 142
Query: 80 TRLTLILY*YIYIYI 36
T ++Y + ++YI
Sbjct: 143 GLFTFLIYYFFWLYI 157
Score = 36.2 bits (82), Expect = 0.25
Identities = 15/60 (25%), Positives = 34/60 (56%)
Frame = -3
Query: 221 FLLVFCFVLVLSCLLFLVVVYMSCFLFFLFECFLLLLFVLLSWEGYSTRLTLILY*YIYI 42
F ++FC L CL + ++ ++ CF+FF+ C ++++ L + + ++ ++ IYI
Sbjct: 37 FNVIFCSYLF--CLFYFIICFIFCFIFFVIRCLFVIIYDFLFF-NFDIYISFLMCDIIYI 93
Score = 32.7 bits (73), Expect = 2.8
Identities = 24/73 (32%), Positives = 40/73 (53%), Gaps = 4/73 (5%)
Frame = -3
Query: 233 FCLCFL---LVFCFV-LVLSCLLFLVVVYMSCFLFFLFECFLLLLFVLLSWEGYSTRLTL 66
FCL + +FCF+ V+ CL V++Y FLFF F+ ++ L + + Y L L
Sbjct: 46 FCLFYFIICFIFCFIFFVIRCL--FVIIY--DFLFFNFDIYISFLMCDIIYIDYICFL-L 100
Query: 65 ILY*YIYIYISDF 27
I + +I+ +I+ F
Sbjct: 101 IYFGFIFSFITGF 113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,184,784
Number of Sequences: 1393205
Number of extensions: 9534173
Number of successful extensions: 55189
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 47026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54209
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
