Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002982A_C02 KMC002982A_c02
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O04905|UMPK_ARATH URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHAT... 202 2e-51
dbj|BAC10860.1| putative UMP/CMP kinase [Oryza sativa (japonica ... 184 6e-46
gb|AAF23371.1|AF187062_1 UMP/CMP kinase a [Oryza sativa] 184 6e-46
gb|AAF23372.1|AF187063_1 UMP/CMP kinase b [Oryza sativa] 181 5e-45
ref|NP_567093.1| URIDYLATE KINASE-like protein; protein id: At3g... 171 9e-42
>sp|O04905|UMPK_ARATH URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHATE KINASE) (UMP KINASE)
(UMP/CMP KINASE) gi|2121275|gb|AAB71135.1| UMP/CMP
kinase [Arabidopsis thaliana]
Length = 202
Score = 202 bits (515), Expect = 2e-51
Identities = 99/118 (83%), Positives = 109/118 (91%)
Frame = -3
Query: 610 RAMLENGNDKFLIDGFPRNEENRAAFEKVTGIEPTFVLFFDCPEEEMERRLLGRNQGRED 431
+A+ ENGNDKFLIDGFPRNEENRAAFEKVT IEP FVLFFDCPEEEME+RLLGRNQGRED
Sbjct: 84 KAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEMEKRLLGRNQGRED 143
Query: 430 DNIETIRKRFNVFLESSLPVINYYDAKLKVRKIDAARPVEEVFESVKAIFSPKNEKAD 257
DNIETIRKRF VFLESSLPVI+YY+AK KVRKI+AA+P+E VFE VKAIFSP+ EK +
Sbjct: 144 DNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVFEEVKAIFSPEAEKVE 201
>dbj|BAC10860.1| putative UMP/CMP kinase [Oryza sativa (japonica cultivar-group)]
Length = 231
Score = 184 bits (468), Expect = 6e-46
Identities = 90/111 (81%), Positives = 99/111 (89%)
Frame = -3
Query: 607 AMLENGNDKFLIDGFPRNEENRAAFEKVTGIEPTFVLFFDCPEEEMERRLLGRNQGREDD 428
AM++N NDKFLIDGFPRNEENRAAFE VT I P FVLFFDC EEEMERRLLGRNQGR DD
Sbjct: 95 AMIKNENDKFLIDGFPRNEENRAAFENVTKISPAFVLFFDCSEEEMERRLLGRNQGRVDD 154
Query: 427 NIETIRKRFNVFLESSLPVINYYDAKLKVRKIDAARPVEEVFESVKAIFSP 275
NIETIRKRF VF+ESSLPVI +Y+AK KV+KIDAA+P+ EVFE VKAIF+P
Sbjct: 155 NIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVFEDVKAIFAP 205
>gb|AAF23371.1|AF187062_1 UMP/CMP kinase a [Oryza sativa]
Length = 210
Score = 184 bits (468), Expect = 6e-46
Identities = 90/111 (81%), Positives = 99/111 (89%)
Frame = -3
Query: 607 AMLENGNDKFLIDGFPRNEENRAAFEKVTGIEPTFVLFFDCPEEEMERRLLGRNQGREDD 428
AM++N NDKFLIDGFPRNEENRAAFE VT I P FVLFFDC EEEMERRLLGRNQGR DD
Sbjct: 95 AMIKNENDKFLIDGFPRNEENRAAFENVTKISPAFVLFFDCSEEEMERRLLGRNQGRVDD 154
Query: 427 NIETIRKRFNVFLESSLPVINYYDAKLKVRKIDAARPVEEVFESVKAIFSP 275
NIETIRKRF VF+ESSLPVI +Y+AK KV+KIDAA+P+ EVFE VKAIF+P
Sbjct: 155 NIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVFEDVKAIFAP 205
>gb|AAF23372.1|AF187063_1 UMP/CMP kinase b [Oryza sativa]
Length = 210
Score = 181 bits (460), Expect = 5e-45
Identities = 89/111 (80%), Positives = 98/111 (88%)
Frame = -3
Query: 607 AMLENGNDKFLIDGFPRNEENRAAFEKVTGIEPTFVLFFDCPEEEMERRLLGRNQGREDD 428
AM++N NDKFLIDGFPRNEENRAAFE VT I P FVLFFDC EEEMERRLLGRNQGR DD
Sbjct: 95 AMIKNENDKFLIDGFPRNEENRAAFENVTKISPAFVLFFDCSEEEMERRLLGRNQGRVDD 154
Query: 427 NIETIRKRFNVFLESSLPVINYYDAKLKVRKIDAARPVEEVFESVKAIFSP 275
NIETIRKRF VF+ESSLPVI +Y+AK KV+KIDAA+ + EVFE VKAIF+P
Sbjct: 155 NIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKSISEVFEDVKAIFAP 205
>ref|NP_567093.1| URIDYLATE KINASE-like protein; protein id: At3g60180.1, supported
by cDNA: 16800., supported by cDNA: gi_18252846
[Arabidopsis thaliana] gi|18252847|gb|AAL62350.1|
uridylate kinase-like protein [Arabidopsis thaliana]
gi|21389695|gb|AAM48046.1| uridylate kinase-like protein
[Arabidopsis thaliana]
Length = 204
Score = 171 bits (432), Expect = 9e-42
Identities = 79/111 (71%), Positives = 98/111 (88%)
Frame = -3
Query: 610 RAMLENGNDKFLIDGFPRNEENRAAFEKVTGIEPTFVLFFDCPEEEMERRLLGRNQGRED 431
+AM E+GNDKFLIDGFPRNEENR FE V IEP FVLFFDCPEEE+ERR++ RNQGRED
Sbjct: 91 KAMEESGNDKFLIDGFPRNEENRNVFENVARIEPAFVLFFDCPEEELERRIMSRNQGRED 150
Query: 430 DNIETIRKRFNVFLESSLPVINYYDAKLKVRKIDAARPVEEVFESVKAIFS 278
DNIETI+KRF VF+ES+LP+I+YY++K K+RKI+AA+ EEVFE+V+ +F+
Sbjct: 151 DNIETIKKRFKVFVESTLPIISYYESKGKLRKINAAKSSEEVFEAVRVLFA 201
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,651,681
Number of Sequences: 1393205
Number of extensions: 9469543
Number of successful extensions: 25863
Number of sequences better than 10.0: 316
Number of HSP's better than 10.0 without gapping: 24789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25641
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
