Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002979A_C01 KMC002979A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63741.1| ubiquitin activating enzyme [Arabidopsis thaliana] 42 0.005
ref|NP_568732.1| ubiquitin activating enzyme; protein id: At5g50... 42 0.005
gb|AAN03850.1| SUMO activating enzyme 1b [Arabidopsis thaliana] 42 0.005
ref|NP_568741.1| ubiquitin activating enzyme; protein id: At5g50... 42 0.005
emb|CAA09619.1| ubiquitin activating enzyme [Lycopersicon escule... 41 0.009
>gb|AAM63741.1| ubiquitin activating enzyme [Arabidopsis thaliana]
Length = 318
Score = 41.6 bits (96), Expect = 0.005
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2
Query: 331 GKTLTELCCDALGDFNPMVRVSV 263
GKT+ E+CCD+L DFNPMV VS+
Sbjct: 86 GKTVAEICCDSLKDFNPMVHVSI 108
>ref|NP_568732.1| ubiquitin activating enzyme; protein id: At5g50580.1, supported by
cDNA: 26820. [Arabidopsis thaliana]
Length = 318
Score = 41.6 bits (96), Expect = 0.005
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2
Query: 331 GKTLTELCCDALGDFNPMVRVSV 263
GKT+ E+CCD+L DFNPMV VS+
Sbjct: 86 GKTVAEICCDSLKDFNPMVHVSI 108
>gb|AAN03850.1| SUMO activating enzyme 1b [Arabidopsis thaliana]
Length = 320
Score = 41.6 bits (96), Expect = 0.005
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2
Query: 331 GKTLTELCCDALGDFNPMVRVSV 263
GKT+ E+CCD+L DFNPMV VS+
Sbjct: 86 GKTVAEICCDSLKDFNPMVHVSI 108
>ref|NP_568741.1| ubiquitin activating enzyme; protein id: At5g50680.1, supported by
cDNA: gi_20259426 [Arabidopsis thaliana]
gi|8777391|dbj|BAA96981.1| ubiquitin activating enzyme
[Arabidopsis thaliana] gi|9758767|dbj|BAB09143.1|
ubiquitin activating enzyme [Arabidopsis thaliana]
gi|20259427|gb|AAM14034.1| putative ubiquitin activating
enzyme [Arabidopsis thaliana] gi|21436117|gb|AAM51305.1|
putative ubiquitin activating enzyme [Arabidopsis
thaliana]
Length = 320
Score = 41.6 bits (96), Expect = 0.005
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2
Query: 331 GKTLTELCCDALGDFNPMVRVSV 263
GKT+ E+CCD+L DFNPMV VS+
Sbjct: 86 GKTVAEICCDSLKDFNPMVHVSI 108
>emb|CAA09619.1| ubiquitin activating enzyme [Lycopersicon esculentum]
Length = 317
Score = 40.8 bits (94), Expect = 0.009
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = -2
Query: 340 VEFGKTLTELCCDALGDFNPMVRVSV 263
V GK+L ELCC++L DFNPMV VSV
Sbjct: 85 VTSGKSLAELCCESLKDFNPMVTVSV 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,647,352
Number of Sequences: 1393205
Number of extensions: 7908775
Number of successful extensions: 22729
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 20948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22642
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
