Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002976A_C01 KMC002976A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190369.1| putative protein; protein id: At3g47850.1, supp... 68 7e-11
gb|AAM64453.1| unknown [Arabidopsis thaliana] 68 7e-11
ref|NP_476723.1| schnurri CG7734-PA gi|19550117|ref|NP_599106.1|... 37 0.16
pir||A56922 transcription factor shn - fruit fly (Drosophila mel... 37 0.16
gb|AAA92297.1| transcription factor 37 0.16
>ref|NP_190369.1| putative protein; protein id: At3g47850.1, supported by cDNA:
2485., supported by cDNA: gi_16226346 [Arabidopsis
thaliana] gi|7487369|pir||T07724 hypothetical protein
T23J7.180 - Arabidopsis thaliana
gi|4741202|emb|CAB41868.1| putative protein [Arabidopsis
thaliana] gi|16226347|gb|AAL16142.1|AF428310_1
AT3g47850/T23J7_180 [Arabidopsis thaliana]
gi|21436041|gb|AAM51598.1| AT3g47850/T23J7_180
[Arabidopsis thaliana]
Length = 322
Score = 68.2 bits (165), Expect = 7e-11
Identities = 44/84 (52%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = -1
Query: 554 SPSSESPLRRTPNV-QPNVVSHPARASLGATVSPSRFALSGHQGNPMNPPSVSVSGTSYI 378
S SSESPLRR + Q N+V H +R S V PS+ P +VS SGT+YI
Sbjct: 249 SSSSESPLRRAAALSQHNMVPHTSRWS--PLVGPSQ---------PGPAVTVSASGTNYI 297
Query: 377 ASSPSPAASGGTSVFRDARQPSPW 306
ASSPSPA GGTSVFR++R SPW
Sbjct: 298 ASSPSPAGFGGTSVFRESRLQSPW 321
>gb|AAM64453.1| unknown [Arabidopsis thaliana]
Length = 322
Score = 68.2 bits (165), Expect = 7e-11
Identities = 44/84 (52%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = -1
Query: 554 SPSSESPLRRTPNV-QPNVVSHPARASLGATVSPSRFALSGHQGNPMNPPSVSVSGTSYI 378
S SSESPLRR + Q N+V H +R S V PS+ P +VS SGT+YI
Sbjct: 249 SSSSESPLRRAAALSQHNMVPHTSRWS--PLVGPSQ---------PGPAVTVSASGTNYI 297
Query: 377 ASSPSPAASGGTSVFRDARQPSPW 306
ASSPSPA GGTSVFR++R SPW
Sbjct: 298 ASSPSPAGFGGTSVFRESRLQSPW 321
>ref|NP_476723.1| schnurri CG7734-PA gi|19550117|ref|NP_599106.1| schnurri CG7734-PB
gi|24652613|ref|NP_476724.2| schnurri CG7734-PC
gi|7303660|gb|AAF58712.1| CG7734-PC [Drosophila
melanogaster] gi|7303661|gb|AAF58713.1| CG7734-PB
[Drosophila melanogaster] gi|21627453|gb|AAM68718.1|
CG7734-PA [Drosophila melanogaster]
Length = 2532
Score = 37.0 bits (84), Expect = 0.16
Identities = 23/73 (31%), Positives = 38/73 (51%), Gaps = 1/73 (1%)
Frame = -1
Query: 554 SPSSESPLRRTPNVQPNVVSHPARASLGATVS-PSRFALSGHQGNPMNPPSVSVSGTSYI 378
+P + + + N +PN+ + P A+L A V P +G GNP PP+ SV+ TS
Sbjct: 2141 APVILAQIAQEENEEPNI-AEPHNANLPAAVQQPDVNEFTGVLGNPTAPPTSSVTATSVS 2199
Query: 377 ASSPSPAASGGTS 339
++ +P A T+
Sbjct: 2200 TTTAAPVAPSSTA 2212
>pir||A56922 transcription factor shn - fruit fly (Drosophila melanogaster)
Length = 2578
Score = 37.0 bits (84), Expect = 0.16
Identities = 23/73 (31%), Positives = 38/73 (51%), Gaps = 1/73 (1%)
Frame = -1
Query: 554 SPSSESPLRRTPNVQPNVVSHPARASLGATVS-PSRFALSGHQGNPMNPPSVSVSGTSYI 378
+P + + + N +PN+ + P A+L A V P +G GNP PP+ SV+ TS
Sbjct: 2187 APVILAQIAQEENEEPNI-AEPHNANLPAAVQQPDVNEFTGVLGNPTAPPTSSVTATSVS 2245
Query: 377 ASSPSPAASGGTS 339
++ +P A T+
Sbjct: 2246 TTTAAPVAPSSTA 2258
>gb|AAA92297.1| transcription factor
Length = 2527
Score = 37.0 bits (84), Expect = 0.16
Identities = 23/73 (31%), Positives = 38/73 (51%), Gaps = 1/73 (1%)
Frame = -1
Query: 554 SPSSESPLRRTPNVQPNVVSHPARASLGATVS-PSRFALSGHQGNPMNPPSVSVSGTSYI 378
+P + + + N +PN+ + P A+L A V P +G GNP PP+ SV+ TS
Sbjct: 2136 APVILAQIAQEENEEPNI-AEPHNANLPAAVQQPDVNEFTGVLGNPTAPPTSSVTATSVS 2194
Query: 377 ASSPSPAASGGTS 339
++ +P A T+
Sbjct: 2195 TTTAAPVAPSSTA 2207
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,513,592
Number of Sequences: 1393205
Number of extensions: 11903716
Number of successful extensions: 32993
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 31024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32837
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
