Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002973A_C01 KMC002973A_c01
(667 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89594.1| P0446G04.18 [Oryza sativa (japonica cultivar-gro... 130 1e-29
gb|AAM63329.1| unknown [Arabidopsis thaliana] 120 2e-26
gb|AAL91253.1| At3g51780/ORF3 [Arabidopsis thaliana] gi|23505833... 120 2e-26
ref|NP_190746.1| putative protein; protein id: At3g51780.1, supp... 120 2e-26
ref|NP_200019.1| putative protein; protein id: At5g52060.1 [Arab... 67 2e-10
>dbj|BAB89594.1| P0446G04.18 [Oryza sativa (japonica cultivar-group)]
Length = 280
Score = 130 bits (328), Expect = 1e-29
Identities = 63/104 (60%), Positives = 80/104 (76%)
Frame = -3
Query: 665 GNEASEKEFLELSELLMSQLLKLDGIEAEGEARLQRKAEVRRVQNIVDAIDSLKARNSNP 486
G + +K+F+ L+ELLM +LLKLDGIEAEGEAR QRKAEVRRVQ +V+ +D LKARN+NP
Sbjct: 177 GRKIEDKDFVVLTELLMMELLKLDGIEAEGEARAQRKAEVRRVQGLVETLDKLKARNANP 236
Query: 485 FIDKGNAVTVTTQWEAFDSGTESSKDTSTTLSSTKITEDWERFD 354
F D+ +V+VTTQWE FD+G S +SST+I DWE+FD
Sbjct: 237 FSDQNKSVSVTTQWETFDNGMGSLNAPPPRVSSTQINTDWEQFD 280
>gb|AAM63329.1| unknown [Arabidopsis thaliana]
Length = 268
Score = 120 bits (301), Expect = 2e-26
Identities = 56/104 (53%), Positives = 76/104 (72%)
Frame = -3
Query: 665 GNEASEKEFLELSELLMSQLLKLDGIEAEGEARLQRKAEVRRVQNIVDAIDSLKARNSNP 486
G + + +EF +ELLM QLLKLDGIEAEG+A++QRKAEVRR+QN+ +A+D LKAR SNP
Sbjct: 165 GTQVAVREFDMAAELLMRQLLKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCSNP 224
Query: 485 FIDKGNAVTVTTQWEAFDSGTESSKDTSTTLSSTKITEDWERFD 354
F+D+ A V+T+WE+F +G S S +T+DWE+FD
Sbjct: 225 FVDQSKAAAVSTEWESFGNGVGSLNPPPPASPSANVTQDWEKFD 268
>gb|AAL91253.1| At3g51780/ORF3 [Arabidopsis thaliana] gi|23505833|gb|AAN28776.1|
At3g51780/ORF3 [Arabidopsis thaliana]
Length = 269
Score = 120 bits (301), Expect = 2e-26
Identities = 56/104 (53%), Positives = 76/104 (72%)
Frame = -3
Query: 665 GNEASEKEFLELSELLMSQLLKLDGIEAEGEARLQRKAEVRRVQNIVDAIDSLKARNSNP 486
G + + +EF +ELLM QLLKLDGIEAEG+A++QRKAEVRR+QN+ +A+D LKAR SNP
Sbjct: 166 GTQVAVREFDMAAELLMRQLLKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCSNP 225
Query: 485 FIDKGNAVTVTTQWEAFDSGTESSKDTSTTLSSTKITEDWERFD 354
F+D+ A V+T+WE+F +G S S +T+DWE+FD
Sbjct: 226 FVDQSKAAAVSTEWESFGNGVGSLNPPPPASPSANVTQDWEKFD 269
>ref|NP_190746.1| putative protein; protein id: At3g51780.1, supported by cDNA:
21630., supported by cDNA: gi_19699282 [Arabidopsis
thaliana] gi|11292138|pir||T51149 hypothetical protein
[imported] - Arabidopsis thaliana
gi|3068705|gb|AAC14405.1| unknown [Arabidopsis thaliana]
Length = 269
Score = 120 bits (301), Expect = 2e-26
Identities = 56/104 (53%), Positives = 76/104 (72%)
Frame = -3
Query: 665 GNEASEKEFLELSELLMSQLLKLDGIEAEGEARLQRKAEVRRVQNIVDAIDSLKARNSNP 486
G + + +EF +ELLM QLLKLDGIEAEG+A++QRKAEVRR+QN+ +A+D LKAR SNP
Sbjct: 166 GTQVAVREFDMAAELLMRQLLKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCSNP 225
Query: 485 FIDKGNAVTVTTQWEAFDSGTESSKDTSTTLSSTKITEDWERFD 354
F+D+ A V+T+WE+F +G S S +T+DWE+FD
Sbjct: 226 FVDQSKAAAVSTEWESFGNGVGSLNPPPPASPSANVTQDWEKFD 269
>ref|NP_200019.1| putative protein; protein id: At5g52060.1 [Arabidopsis thaliana]
gi|10177741|dbj|BAB11054.1| contains similarity to
unknown protein~emb|CAB87278.1~gene_id:MSG15.15
[Arabidopsis thaliana]
Length = 326
Score = 67.0 bits (162), Expect = 2e-10
Identities = 30/58 (51%), Positives = 46/58 (78%)
Frame = -3
Query: 665 GNEASEKEFLELSELLMSQLLKLDGIEAEGEARLQRKAEVRRVQNIVDAIDSLKARNS 492
G + +EK+ + + ELLM++L+KLD I AEG+ +LQRK +V+RVQN V+ +D+LK +NS
Sbjct: 169 GGKIAEKDLVTVIELLMNELIKLDAIVAEGDVKLQRKMQVKRVQNYVETLDALKVKNS 226
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,740,966
Number of Sequences: 1393205
Number of extensions: 10449423
Number of successful extensions: 28535
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 27285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28506
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
