Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002964A_C01 KMC002964A_c01
(674 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61548.1| unknown [Arabidopsis thaliana] 181 6e-45
gb|AAK62447.1|AF387002_1 Unknown protein [Arabidopsis thaliana] 181 6e-45
ref|NP_564376.1| expressed protein; protein id: At1g31190.1, sup... 181 6e-45
pir||A86438 hypothetical protein F28K20.15 [imported] - Arabidop... 173 2e-42
ref|NP_710410.1| inositol monophophatase family protein [Leptosp... 87 2e-16
>gb|AAM61548.1| unknown [Arabidopsis thaliana]
Length = 371
Score = 181 bits (460), Expect = 6e-45
Identities = 85/102 (83%), Positives = 92/102 (89%)
Frame = -2
Query: 673 RRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVLMVEEAGGTVSRMDGGNFCVFDRSV 494
RRLGAAAVDMCHVALGI E+YWEYRLKPWDMAAGVL+VEEAGG V+RMDGG F VFDRSV
Sbjct: 270 RRLGAAAVDMCHVALGIAESYWEYRLKPWDMAAGVLIVEEAGGAVTRMDGGKFSVFDRSV 329
Query: 493 LVSNGLLHAKLLERIGPATEKLKGKGIDFSLWYKPEDYRADV 368
LVSNG+LH KLLERI PATE LK KGIDFSLW+KPEDY ++
Sbjct: 330 LVSNGVLHPKLLERIAPATENLKSKGIDFSLWFKPEDYHTEL 371
>gb|AAK62447.1|AF387002_1 Unknown protein [Arabidopsis thaliana]
Length = 371
Score = 181 bits (460), Expect = 6e-45
Identities = 85/102 (83%), Positives = 92/102 (89%)
Frame = -2
Query: 673 RRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVLMVEEAGGTVSRMDGGNFCVFDRSV 494
RRLGAAAVDMCHVALGI E+YWEYRLKPWDMAAGVL+VEEAGG V+RMDGG F VFDRSV
Sbjct: 270 RRLGAAAVDMCHVALGIAESYWEYRLKPWDMAAGVLIVEEAGGAVTRMDGGKFSVFDRSV 329
Query: 493 LVSNGLLHAKLLERIGPATEKLKGKGIDFSLWYKPEDYRADV 368
LVSNG+LH KLLERI PATE LK KGIDFSLW+KPEDY ++
Sbjct: 330 LVSNGVLHPKLLERIAPATENLKSKGIDFSLWFKPEDYHTEL 371
>ref|NP_564376.1| expressed protein; protein id: At1g31190.1, supported by cDNA:
1237., supported by cDNA: gi_14423529 [Arabidopsis
thaliana]
Length = 371
Score = 181 bits (460), Expect = 6e-45
Identities = 85/102 (83%), Positives = 92/102 (89%)
Frame = -2
Query: 673 RRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVLMVEEAGGTVSRMDGGNFCVFDRSV 494
RRLGAAAVDMCHVALGI E+YWEYRLKPWDMAAGVL+VEEAGG V+RMDGG F VFDRSV
Sbjct: 270 RRLGAAAVDMCHVALGIAESYWEYRLKPWDMAAGVLIVEEAGGAVTRMDGGKFSVFDRSV 329
Query: 493 LVSNGLLHAKLLERIGPATEKLKGKGIDFSLWYKPEDYRADV 368
LVSNG+LH KLLERI PATE LK KGIDFSLW+KPEDY ++
Sbjct: 330 LVSNGVLHPKLLERIAPATENLKSKGIDFSLWFKPEDYHTEL 371
>pir||A86438 hypothetical protein F28K20.15 [imported] - Arabidopsis thaliana
gi|4512616|gb|AAD21685.1| Contains similarity to
gi|1653332 extragenic suppressor (SuhB) from
Synechocystis sp. gb|D90912 and is a member of the
Inositol monophophatase family PF|00459. EST
gb|AA597395 comes from this gene. [Arabidopsis thaliana]
Length = 353
Score = 173 bits (439), Expect = 2e-42
Identities = 85/112 (75%), Positives = 92/112 (81%), Gaps = 10/112 (8%)
Frame = -2
Query: 673 RRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVL----------MVEEAGGTVSRMDG 524
RRLGAAAVDMCHVALGI E+YWEYRLKPWDMAAGVL +VEEAGG V+RMDG
Sbjct: 242 RRLGAAAVDMCHVALGIAESYWEYRLKPWDMAAGVLSLIHVRKWTQIVEEAGGAVTRMDG 301
Query: 523 GNFCVFDRSVLVSNGLLHAKLLERIGPATEKLKGKGIDFSLWYKPEDYRADV 368
G F VFDRSVLVSNG+LH KLLERI PATE LK KGIDFSLW+KPEDY ++
Sbjct: 302 GKFSVFDRSVLVSNGVLHPKLLERIAPATENLKSKGIDFSLWFKPEDYHTEL 353
>ref|NP_710410.1| inositol monophophatase family protein [Leptospira interrogans
serovar lai str. 56601]
gi|24193598|gb|AAN47428.1|AE011211_11 inositol
monophophatase family protein [Leptospira interrogans
serovar lai str. 56601]
Length = 271
Score = 87.0 bits (214), Expect = 2e-16
Identities = 40/76 (52%), Positives = 54/76 (70%)
Frame = -2
Query: 673 RRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVLMVEEAGGTVSRMDGGNFCVFDRSV 494
RR GAA +D+C VA G +A+WE LKPWDMAAG +++ EAGG +S DG F + +V
Sbjct: 189 RRTGAAGLDLCWVAEGRFDAFWEEDLKPWDMAAGAIILAEAGGEMSTYDGNTFTPYIPNV 248
Query: 493 LVSNGLLHAKLLERIG 446
+ SN LLH K++ER+G
Sbjct: 249 IASNKLLHQKMIERMG 264
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 582,731,378
Number of Sequences: 1393205
Number of extensions: 13000415
Number of successful extensions: 35426
Number of sequences better than 10.0: 263
Number of HSP's better than 10.0 without gapping: 33852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35381
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
