Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002962A_C01 KMC002962A_c01
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193002.1| endomembrane protein 70, putative; protein id: ... 114 1e-24
dbj|BAA81763.1| ESTs AU064813(E40579),D24600(R2232) correspond t... 108 5e-23
gb|AAM20600.1| putative protein [Arabidopsis thaliana] gi|221363... 107 2e-22
ref|NP_198366.1| endomembrane protein 70, putative; protein id: ... 107 2e-22
dbj|BAB10022.1| endosomal protein-like [Arabidopsis thaliana] 107 2e-22
>ref|NP_193002.1| endomembrane protein 70, putative; protein id: At4g12650.1
[Arabidopsis thaliana] gi|25407528|pir||H85135
hypothetical protein AT4g12650 [imported] - Arabidopsis
thaliana gi|5823576|emb|CAB53758.1| putative protein
[Arabidopsis thaliana] gi|7267967|emb|CAB78308.1|
putative protein [Arabidopsis thaliana]
Length = 527
Score = 114 bits (285), Expect = 1e-24
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = -2
Query: 644 VFLYSVNYLVFDLQSLSGPVSAVLYLGYSLLMAVAIMLSTGTIGFLMSFYFVHYLFSSVK 465
VF YS+NYLVFDLQSLSGPVSA+LY+GYSLLMA+AIML+TGTIGFL SFYFVHYLFSSVK
Sbjct: 466 VFAYSINYLVFDLQSLSGPVSAMLYIGYSLLMAIAIMLATGTIGFLTSFYFVHYLFSSVK 525
Query: 464 ID 459
ID
Sbjct: 526 ID 527
>dbj|BAA81763.1| ESTs AU064813(E40579),D24600(R2232) correspond to a region of the
predicted gene.~Similar to Human mRNA for KIAA0255 gene.
(D87444) [Oryza sativa (japonica cultivar-group)]
Length = 661
Score = 108 bits (271), Expect = 5e-23
Identities = 54/62 (87%), Positives = 58/62 (93%)
Frame = -2
Query: 644 VFLYSVNYLVFDLQSLSGPVSAVLYLGYSLLMAVAIMLSTGTIGFLMSFYFVHYLFSSVK 465
VFLYS+NYLVFDL+SLSGPVSA+LYLGYS LMA AIML+TGTIGFL SF FVHYLFSSVK
Sbjct: 600 VFLYSINYLVFDLRSLSGPVSAMLYLGYSFLMAFAIMLATGTIGFLTSFSFVHYLFSSVK 659
Query: 464 ID 459
ID
Sbjct: 660 ID 661
>gb|AAM20600.1| putative protein [Arabidopsis thaliana] gi|22136376|gb|AAM91266.1|
putative protein [Arabidopsis thaliana]
Length = 425
Score = 107 bits (266), Expect = 2e-22
Identities = 49/62 (79%), Positives = 58/62 (93%)
Frame = -2
Query: 644 VFLYSVNYLVFDLQSLSGPVSAVLYLGYSLLMAVAIMLSTGTIGFLMSFYFVHYLFSSVK 465
+F+YS+NYLVFDL+SLSGPVSA LYLGYSL M +AIML+TGT+GFL SF+FVHYLFSSVK
Sbjct: 364 IFIYSINYLVFDLKSLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVK 423
Query: 464 ID 459
+D
Sbjct: 424 LD 425
>ref|NP_198366.1| endomembrane protein 70, putative; protein id: At5g35160.1
[Arabidopsis thaliana]
Length = 627
Score = 107 bits (266), Expect = 2e-22
Identities = 49/62 (79%), Positives = 58/62 (93%)
Frame = -2
Query: 644 VFLYSVNYLVFDLQSLSGPVSAVLYLGYSLLMAVAIMLSTGTIGFLMSFYFVHYLFSSVK 465
+F+YS+NYLVFDL+SLSGPVSA LYLGYSL M +AIML+TGT+GFL SF+FVHYLFSSVK
Sbjct: 566 IFIYSINYLVFDLKSLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVK 625
Query: 464 ID 459
+D
Sbjct: 626 LD 627
>dbj|BAB10022.1| endosomal protein-like [Arabidopsis thaliana]
Length = 658
Score = 107 bits (266), Expect = 2e-22
Identities = 49/62 (79%), Positives = 58/62 (93%)
Frame = -2
Query: 644 VFLYSVNYLVFDLQSLSGPVSAVLYLGYSLLMAVAIMLSTGTIGFLMSFYFVHYLFSSVK 465
+F+YS+NYLVFDL+SLSGPVSA LYLGYSL M +AIML+TGT+GFL SF+FVHYLFSSVK
Sbjct: 597 IFIYSINYLVFDLKSLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVK 656
Query: 464 ID 459
+D
Sbjct: 657 LD 658
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,799,586
Number of Sequences: 1393205
Number of extensions: 9150321
Number of successful extensions: 22913
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 22018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22893
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
