Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002959A_C02 KMC002959A_c02
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF75822.1|AF101786_1 adhesive/proline-rich protein homolog [... 41 0.011
ref|NP_188119.1| RNA-binding protein; protein id: At3g15010.1, s... 40 0.019
sp|P27214|ANXB_BOVIN Annexin A11 (Annexin XI) (Calcyclin-associa... 40 0.019
ref|NP_776927.1| annexin A11 [Bos taurus] gi|423233|pir||S23447 ... 40 0.019
gb|AAH12875.1| Similar to annexin A11 [Mus musculus] 39 0.032
>gb|AAF75822.1|AF101786_1 adhesive/proline-rich protein homolog [Pinus taeda]
Length = 86
Score = 40.8 bits (94), Expect = 0.011
Identities = 20/50 (40%), Positives = 22/50 (44%)
Frame = -3
Query: 549 PVPVSGARFPPASGGGYPDGSQYGYPSQPMPMQRPPTGGMYPPPYY*GVL 400
P P +P GYP G GYP Q P+Q PP G PP G L
Sbjct: 11 PAPGYPQGYPQGYPQGYPQGYPQGYPQQAPPVQAPPAYGQQQPPRQQGFL 60
>ref|NP_188119.1| RNA-binding protein; protein id: At3g15010.1, supported by cDNA:
gi_17380743, supported by cDNA: gi_20259620 [Arabidopsis
thaliana] gi|8777484|dbj|BAA97064.1| contains similarity
to RNA-binding protein~gene_id:K15M2.15 [Arabidopsis
thaliana] gi|17380744|gb|AAL36202.1| putative
RNA-binding protein [Arabidopsis thaliana]
gi|20259621|gb|AAM14167.1| putative RNA-binding protein
[Arabidopsis thaliana]
Length = 404
Score = 40.0 bits (92), Expect = 0.019
Identities = 25/56 (44%), Positives = 28/56 (49%), Gaps = 17/56 (30%)
Frame = -3
Query: 528 RFPPAS---GGGYPDGSQY------GYPSQ------PMPMQRPPTGGMYP--PPYY 412
R PP+S GGGYP+ Y GYP Q P+ R P GGMYP PP Y
Sbjct: 349 RMPPSSMPGGGGYPESGHYGLSSSAGYPGQHHQAVGTSPVPRVPHGGMYPNGPPNY 404
>sp|P27214|ANXB_BOVIN Annexin A11 (Annexin XI) (Calcyclin-associated annexin 50) (CAP-50)
gi|279670|pir||LUBO11 annexin XI form A - bovine
gi|162674|gb|AAA30379.1| annexin
Length = 503
Score = 40.0 bits (92), Expect = 0.019
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -3
Query: 525 FPPASGGGYPDGSQYGYPSQPMPMQRP-PTGGMYPPP 418
+P A GGGYP G+ QP P Q+P P+ GMYPPP
Sbjct: 73 YPGAPGGGYPPVPPGGF-GQPPPAQQPVPSYGMYPPP 108
>ref|NP_776927.1| annexin A11 [Bos taurus] gi|423233|pir||S23447 annexin XI form B -
bovine gi|78|emb|CAA77801.1| annexin XI [Bos taurus]
Length = 505
Score = 40.0 bits (92), Expect = 0.019
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -3
Query: 525 FPPASGGGYPDGSQYGYPSQPMPMQRP-PTGGMYPPP 418
+P A GGGYP G+ QP P Q+P P+ GMYPPP
Sbjct: 75 YPGAPGGGYPPVPPGGF-GQPPPAQQPVPSYGMYPPP 110
>gb|AAH12875.1| Similar to annexin A11 [Mus musculus]
Length = 503
Score = 39.3 bits (90), Expect = 0.032
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 525 FPPASGGGYPDGSQYGYPSQPMPMQRP-PTGGMYPPP 418
+P A GGGYP G+ QP P Q+P P GMYPPP
Sbjct: 73 YPGAPGGGYPPVPPGGF-GQPPPAQQPVPPYGMYPPP 108
Score = 33.9 bits (76), Expect = 1.3
Identities = 22/50 (44%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 549 PVPVSGARFPPASGGGYPDG--SQYGYPSQPMPMQRPPTGGMYPPPYY*G 406
PVP G PP GG P G S YP P+P Q P G PP Y G
Sbjct: 98 PVPPYGMYPPP--GGNPPPGMPSYPAYPGAPVPGQPMPPTGQQPPGAYPG 145
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,368,179
Number of Sequences: 1393205
Number of extensions: 13198723
Number of successful extensions: 55437
Number of sequences better than 10.0: 179
Number of HSP's better than 10.0 without gapping: 47629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54098
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
