Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002958A_C01 KMC002958A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD27754.1| hypothetical protein [Anopheles gambiae] 34 0.98
gb|EAA01290.1| agCP12554 [Anopheles gambiae str. PEST] 34 0.98
emb|CAD27483.1| hypothetical protein [Anopheles gambiae] 34 0.98
ref|NP_269974.1| M protein trans-acting positive regulator [Stre... 33 1.7
ref|NP_609148.1| CG7154-PA [Drosophila melanogaster] gi|7297294|... 33 1.7
>emb|CAD27754.1| hypothetical protein [Anopheles gambiae]
Length = 1645
Score = 34.3 bits (77), Expect = 0.98
Identities = 25/69 (36%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Frame = -1
Query: 427 ITPVKKPYDHWWLESPDKGIETSTGFDLDADHSYDSFHGISYLKPVTE----SPCHARGA 260
ITP + +D+ D+G ETS+ + D + Y SFH S LK + E +P + A
Sbjct: 559 ITPDLQTFDYH-----DEGGETSSVYSCDTEGYYTSFHVDSGLKTLKEEEPMTPLQSTTA 613
Query: 259 LSNILEFVS 233
LS+I F S
Sbjct: 614 LSSITSFSS 622
>gb|EAA01290.1| agCP12554 [Anopheles gambiae str. PEST]
Length = 1109
Score = 34.3 bits (77), Expect = 0.98
Identities = 25/69 (36%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Frame = -1
Query: 427 ITPVKKPYDHWWLESPDKGIETSTGFDLDADHSYDSFHGISYLKPVTE----SPCHARGA 260
ITP + +D+ D+G ETS+ + D + Y SFH S LK + E +P + A
Sbjct: 438 ITPDLQTFDYH-----DEGGETSSVYSCDTEGYYTSFHVDSGLKTLKEEEPMTPLQSTTA 492
Query: 259 LSNILEFVS 233
LS+I F S
Sbjct: 493 LSSITSFSS 501
>emb|CAD27483.1| hypothetical protein [Anopheles gambiae]
Length = 765
Score = 34.3 bits (77), Expect = 0.98
Identities = 25/69 (36%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Frame = -1
Query: 427 ITPVKKPYDHWWLESPDKGIETSTGFDLDADHSYDSFHGISYLKPVTE----SPCHARGA 260
ITP + +D+ D+G ETS+ + D + Y SFH S LK + E +P + A
Sbjct: 560 ITPDLQTFDYH-----DEGGETSSVYSCDTEGYYTSFHVDSGLKTLKEEEPMTPLQSTTA 614
Query: 259 LSNILEFVS 233
LS+I F S
Sbjct: 615 LSSITSFSS 623
>ref|NP_269974.1| M protein trans-acting positive regulator [Streptococcus pyogenes]
gi|13623027|gb|AAK34695.1| M protein trans-acting
positive regulator [Streptococcus pyogenes M1 GAS]
Length = 529
Score = 33.5 bits (75), Expect = 1.7
Identities = 20/90 (22%), Positives = 37/90 (40%)
Frame = +2
Query: 50 YKVHQVDYLKKKKKKQSTCYAQDIFMFLKAFRISRYSQTVFDHETQSLRQSTRKLSCRFD 229
YK H Y KK ++ + Q F R+ ++ ET + ++ + +
Sbjct: 217 YKGHSAVYDNKKTSQRFSQLIQSSLEFQDLSRLFHLKFGLYLDETTIAEMFSNHVNDQLE 276
Query: 230 IGYKFKDVTQRSSSMAGAFSNWFQVANSME 319
IGY F + Q S + +NW + + +E
Sbjct: 277 IGYAFDSIKQDSPTGCRKVTNWVHLLDELE 306
>ref|NP_609148.1| CG7154-PA [Drosophila melanogaster] gi|7297294|gb|AAF52557.1|
CG7154-PA [Drosophila melanogaster]
gi|17862344|gb|AAL39649.1| LD22651p [Drosophila
melanogaster]
Length = 861
Score = 33.5 bits (75), Expect = 1.7
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = -1
Query: 523 KNRHKSRIKKGEKKSSKKGHKHHYSKGGNTKD 428
+ RHK KK +KK +K HKHH K ++D
Sbjct: 81 RERHKKSKKKKKKKDREKKHKHHKEKRHRSRD 112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,538,550
Number of Sequences: 1393205
Number of extensions: 9269335
Number of successful extensions: 30507
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 28804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30300
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
