Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002951A_C01 KMC002951A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178256.1| putative protein transport protein SEC12p; prot... 88 9e-17
pir||T48907 St12p protein [imported] - Arabidopsis thaliana gi|1... 87 1e-16
ref|NP_568738.1| St12p protein; protein id: At5g50550.1 [Arabido... 87 2e-16
pir||S28604 St12p protein - Arabidopsis thaliana 74 1e-12
dbj|BAA96978.1| protein transport protein SEC12p-like [Arabidops... 73 2e-12
>ref|NP_178256.1| putative protein transport protein SEC12p; protein id: At2g01470.1,
supported by cDNA: gi_166877, supported by cDNA:
gi_18377756 [Arabidopsis thaliana]
gi|25410908|pir||B84425 probable protein transport
protein SEC12p [imported] - Arabidopsis thaliana
gi|3785976|gb|AAC67323.1| putative protein transport
protein SEC12p [Arabidopsis thaliana]
gi|18377757|gb|AAL67028.1| putative protein transport
protein SEC12p [Arabidopsis thaliana]
gi|21689839|gb|AAM67563.1| putative protein transport
protein SEC12p [Arabidopsis thaliana]
Length = 393
Score = 87.8 bits (216), Expect = 9e-17
Identities = 46/88 (52%), Positives = 59/88 (66%), Gaps = 2/88 (2%)
Frame = -2
Query: 583 TPSGDIVIVSSTNMQIQTTIKKAHLGIVTALAFSPDSRALASVSMDSSARVTIIEGKKTS 404
T GD++I+ ST MQ +KKAHLG+VTAL FSPDSR L SVS DS AR+T+IE K
Sbjct: 304 TLEGDVLILESTRMQTIQVVKKAHLGLVTALTFSPDSRGLVSVSFDSRARLTMIEQKGDK 363
Query: 403 GGVSLW--IALFIILLAVAAYFLKVERI 326
GV W + L ++L VA Y++K + I
Sbjct: 364 PGVRWWLLVLLIVLLYVVAYYYMKAKGI 391
>pir||T48907 St12p protein [imported] - Arabidopsis thaliana
gi|166878|gb|AAA32871.1| St12p protein
Length = 393
Score = 87.4 bits (215), Expect = 1e-16
Identities = 46/88 (52%), Positives = 59/88 (66%), Gaps = 2/88 (2%)
Frame = -2
Query: 583 TPSGDIVIVSSTNMQIQTTIKKAHLGIVTALAFSPDSRALASVSMDSSARVTIIEGKKTS 404
T GD++I+ ST MQ +KKAHLG+VTAL FSPDSR L SVS DS AR+T+IE K
Sbjct: 304 TLEGDVLILESTRMQTIQIVKKAHLGLVTALTFSPDSRGLVSVSFDSRARLTMIEQKGDK 363
Query: 403 GGVSLW--IALFIILLAVAAYFLKVERI 326
GV W + L ++L VA Y++K + I
Sbjct: 364 PGVRWWLLVLLIVLLYVVAYYYMKAKGI 391
>ref|NP_568738.1| St12p protein; protein id: At5g50550.1 [Arabidopsis thaliana]
gi|22327692|ref|NP_680414.1| St12p protein; protein id:
At5g50650.1 [Arabidopsis thaliana]
gi|9758764|dbj|BAB09140.1| St12p protein [Arabidopsis
thaliana]
Length = 383
Score = 86.7 bits (213), Expect = 2e-16
Identities = 45/84 (53%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = -2
Query: 583 TPSGDIVIVSSTNMQIQTTIKKAHLGIVTALAFSPDSRALASVSMDSSARVTIIEGKKTS 404
T GD++I+ ST MQ +KKAHLG+VTAL FSPDSR L SVS DS AR+T+I+ K
Sbjct: 294 TLEGDVLIIDSTKMQTNQIVKKAHLGLVTALTFSPDSRCLVSVSFDSRARLTVIKQKGEK 353
Query: 403 GGVSLWI-ALFIILLAVAAYFLKV 335
V LW+ AL +L+ V Y+L V
Sbjct: 354 RRVYLWVAALLFVLVYVVLYYLMV 377
>pir||S28604 St12p protein - Arabidopsis thaliana
Length = 367
Score = 73.9 bits (180), Expect = 1e-12
Identities = 38/63 (60%), Positives = 45/63 (71%)
Frame = -2
Query: 583 TPSGDIVIVSSTNMQIQTTIKKAHLGIVTALAFSPDSRALASVSMDSSARVTIIEGKKTS 404
T GD++I+ ST MQ +KKAHLG+VTAL FSPDSR L SVS DS AR+T+IE K
Sbjct: 304 TLEGDVLILESTRMQTIQIVKKAHLGLVTALTFSPDSRGLVSVSFDSRARLTMIEQKGDK 363
Query: 403 GGV 395
GV
Sbjct: 364 PGV 366
>dbj|BAA96978.1| protein transport protein SEC12p-like [Arabidopsis thaliana]
Length = 372
Score = 73.2 bits (178), Expect = 2e-12
Identities = 35/57 (61%), Positives = 43/57 (75%)
Frame = -2
Query: 583 TPSGDIVIVSSTNMQIQTTIKKAHLGIVTALAFSPDSRALASVSMDSSARVTIIEGK 413
T GD++I+ ST MQ +KKAHLG+VTAL FSPDSR L SVS DS AR+T+I+ K
Sbjct: 294 TLEGDVLIIDSTKMQTNQIVKKAHLGLVTALTFSPDSRCLVSVSFDSRARLTVIKQK 350
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,961,062
Number of Sequences: 1393205
Number of extensions: 9779184
Number of successful extensions: 23267
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 21655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23260
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
