Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002944A_C01 KMC002944A_c01
(414 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65080.1| unknown [Arabidopsis thaliana] 38 0.034
ref|NP_565177.1| expressed protein; protein id: At1g78310.1, sup... 38 0.034
ref|NP_572685.1| CG11122-PA [Drosophila melanogaster] gi|1072818... 27 0.16
gb|AAM50210.1| GH28840p [Drosophila melanogaster] 27 0.17
ref|NP_442416.1| hypothetical protein [Synechocystis sp. PCC 680... 33 0.84
>gb|AAM65080.1| unknown [Arabidopsis thaliana]
Length = 311
Score = 37.7 bits (86), Expect = 0.034
Identities = 17/27 (62%), Positives = 22/27 (80%)
Frame = -3
Query: 412 SPNSGQLGFPQLPLSPTVPVPSPRWRG 332
SP+SGQLGFP P TVP+PSP+++G
Sbjct: 286 SPSSGQLGFPVSP--TTVPLPSPKYKG 310
>ref|NP_565177.1| expressed protein; protein id: At1g78310.1, supported by cDNA:
36448., supported by cDNA: gi_17529351 [Arabidopsis
thaliana] gi|8052537|gb|AAF71801.1|AC013430_10 F3F9.15
[Arabidopsis thaliana] gi|17529352|gb|AAL38903.1|
unknown protein [Arabidopsis thaliana]
gi|21436409|gb|AAM51405.1| unknown protein [Arabidopsis
thaliana]
Length = 311
Score = 37.7 bits (86), Expect = 0.034
Identities = 17/27 (62%), Positives = 22/27 (80%)
Frame = -3
Query: 412 SPNSGQLGFPQLPLSPTVPVPSPRWRG 332
SP+SGQLGFP P TVP+PSP+++G
Sbjct: 286 SPSSGQLGFPVSP--TTVPLPSPKYKG 310
>ref|NP_572685.1| CG11122-PA [Drosophila melanogaster] gi|10728183|gb|AAF48000.2|
CG11122-PA [Drosophila melanogaster]
Length = 3536
Score = 27.3 bits (59), Expect(2) = 0.16
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = +3
Query: 201 PTTRN*MNPHSNHHHHQ 251
P + M PH +HHHHQ
Sbjct: 3004 PQQQQQMQPHHHHHHHQ 3020
Score = 26.9 bits (58), Expect(2) = 0.16
Identities = 15/59 (25%), Positives = 25/59 (41%), Gaps = 11/59 (18%)
Frame = +3
Query: 228 HSNHHHHQ-----------SPCTMNKSSIIEQHDSVTNHA*STSQRPLHRGLGTGTVGE 371
H +HHHHQ +P M S + N +T+++P ++ T T G+
Sbjct: 3031 HPHHHHHQVEPMAAPAAPAAPAAMPAPSALPPGRKPKNSTANTAKKPANKSAPTKTKGK 3089
>gb|AAM50210.1| GH28840p [Drosophila melanogaster]
Length = 1272
Score = 27.3 bits (59), Expect(2) = 0.17
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = +3
Query: 201 PTTRN*MNPHSNHHHHQ 251
P + M PH +HHHHQ
Sbjct: 740 PQQQQQMQPHHHHHHHQ 756
Score = 26.9 bits (58), Expect(2) = 0.17
Identities = 15/59 (25%), Positives = 25/59 (41%), Gaps = 11/59 (18%)
Frame = +3
Query: 228 HSNHHHHQ-----------SPCTMNKSSIIEQHDSVTNHA*STSQRPLHRGLGTGTVGE 371
H +HHHHQ +P M S + N +T+++P ++ T T G+
Sbjct: 767 HPHHHHHQVEPMAAPAAPAAPAAMPAPSALPPGRKPKNSTANTAKKPANKSAPTKTKGK 825
>ref|NP_442416.1| hypothetical protein [Synechocystis sp. PCC 6803]
gi|7469895|pir||S75751 hypothetical protein sll0547 -
Synechocystis sp. (strain PCC 6803)
gi|1001245|dbj|BAA10486.1| ORF_ID:sll0547~hypothetical
protein [Synechocystis sp. PCC 6803]
Length = 220
Score = 33.1 bits (74), Expect = 0.84
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = -3
Query: 394 LGFPQLPLSPTVPVPSPRWRGL*LVD 317
L PQLP+SP P+ +PRWR LV+
Sbjct: 137 LPVPQLPISPVSPLKTPRWRSPELVE 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,491,379
Number of Sequences: 1393205
Number of extensions: 7793730
Number of successful extensions: 25404
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 22767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24990
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
