Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002939A_C02 KMC002939A_c02
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD40549.1| OSJNBa0072K14.5 [Oryza sativa (japonica cultivar... 100 1e-20
ref|NP_180907.1| unknown protein; protein id: At2g33490.1 [Arabi... 95 8e-19
ref|NP_189326.1| unknown protein; protein id: At3g26910.1 [Arabi... 89 3e-17
gb|AAM97017.1| unknown protein [Arabidopsis thaliana] gi|2319797... 89 3e-17
ref|NP_198926.1| putative protein; protein id: At5g41100.1 [Arab... 86 4e-16
>emb|CAD40549.1| OSJNBa0072K14.5 [Oryza sativa (japonica cultivar-group)]
Length = 624
Score = 100 bits (250), Expect = 1e-20
Identities = 58/110 (52%), Positives = 72/110 (64%), Gaps = 1/110 (0%)
Frame = -1
Query: 598 SSPKISELHELPRPPTNFPSXSRLLGLVGYSGPLVPRGQKVSAPNNLVI-SSAASPLPIP 422
+SP+ISELHELPRPP N + GLVGYSGPLV R Q + P S ASPLP P
Sbjct: 498 TSPRISELHELPRPPANVGAARP--GLVGYSGPLVSRRQVPNVPTRASPPSQTASPLPRP 555
Query: 421 PQAMARSFSIPSSGARVTALHSSSALESSHISSISEDIASPPLTPIALSN 272
P AM RS+SIPS+ R L + LE+ H S S +++SPPLTPI+L++
Sbjct: 556 PAAMTRSYSIPSNSQRTPILTVNKLLEARH-SRESSEVSSPPLTPISLAD 604
>ref|NP_180907.1| unknown protein; protein id: At2g33490.1 [Arabidopsis thaliana]
gi|25408277|pir||B84746 hypothetical protein At2g33490
[imported] - Arabidopsis thaliana
gi|2459431|gb|AAB80666.1| unknown protein [Arabidopsis
thaliana]
Length = 521
Score = 94.7 bits (234), Expect = 8e-19
Identities = 58/120 (48%), Positives = 77/120 (63%)
Frame = -1
Query: 616 ASPTIVSSPKISELHELPRPPTNFPSXSRLLGLVGYSGPLVPRGQKVSAPNNLVISSAAS 437
ASPT VS+PKISELHELPRPP S ++ +GYS PLV R Q +S P +I+++AS
Sbjct: 395 ASPTFVSTPKISELHELPRPPPR--SSTKSSRELGYSAPLVSRSQLLSKP---LITNSAS 449
Query: 436 PLPIPPQAMARSFSIPSSGARVTALHSSSALESSHISSISEDIASPPLTPIALSNSRPSS 257
PLPIPP A+ RSFSIP+S R + L S + + + SPPLTP++L + P +
Sbjct: 450 PLPIPP-AITRSFSIPTSNLRASDLDMS----KTSLGTKKLGTPSPPLTPMSLIHPPPQA 504
>ref|NP_189326.1| unknown protein; protein id: At3g26910.1 [Arabidopsis thaliana]
gi|9279681|dbj|BAB01238.1|
gb|AAB80666.1~gene_id:MDJ14.25~similar to unknown
protein [Arabidopsis thaliana]
Length = 621
Score = 89.4 bits (220), Expect = 3e-17
Identities = 57/129 (44%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Frame = -1
Query: 616 ASPTIVSSPKISELHELPRPPTNF---PSXSRLLGLVGYSGPLVPRGQKVSAPNNLVISS 446
ASP SSP+++ELHELPRPP +F P ++ GLVG+S PL Q+ S V S+
Sbjct: 479 ASPPPASSPRLNELHELPRPPGHFAPPPRRAKSPGLVGHSAPLTAWNQERSTVTVAVPSA 538
Query: 445 ---AASPLPIPPQAMARSFSIPSSGARVTALHSSSALESSHISSISEDI-ASPPLTPIAL 278
ASPLP+PP + RS+SIPS RV S + +DI ASPPLTP++L
Sbjct: 539 TNIVASPLPVPPLVVPRSYSIPSRNQRVV---------SQRLVERRDDIVASPPLTPMSL 589
Query: 277 SNSRPSSDG 251
S P + G
Sbjct: 590 SRPLPQATG 598
>gb|AAM97017.1| unknown protein [Arabidopsis thaliana] gi|23197974|gb|AAN15514.1|
unknown protein [Arabidopsis thaliana]
Length = 608
Score = 89.4 bits (220), Expect = 3e-17
Identities = 57/129 (44%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Frame = -1
Query: 616 ASPTIVSSPKISELHELPRPPTNF---PSXSRLLGLVGYSGPLVPRGQKVSAPNNLVISS 446
ASP SSP+++ELHELPRPP +F P ++ GLVG+S PL Q+ S V S+
Sbjct: 479 ASPPPASSPRLNELHELPRPPGHFAPPPRRAKSPGLVGHSAPLTAWNQERSTVTVAVPSA 538
Query: 445 ---AASPLPIPPQAMARSFSIPSSGARVTALHSSSALESSHISSISEDI-ASPPLTPIAL 278
ASPLP+PP + RS+SIPS RV S + +DI ASPPLTP++L
Sbjct: 539 TNIVASPLPVPPLVVPRSYSIPSRNQRVV---------SQRLVERRDDIVASPPLTPMSL 589
Query: 277 SNSRPSSDG 251
S P + G
Sbjct: 590 SRPLPQATG 598
>ref|NP_198926.1| putative protein; protein id: At5g41100.1 [Arabidopsis thaliana]
gi|9759156|dbj|BAB09712.1|
gb|AAB80666.1~gene_id:MEE6.17~similar to unknown protein
[Arabidopsis thaliana]
Length = 534
Score = 85.9 bits (211), Expect = 4e-16
Identities = 57/127 (44%), Positives = 72/127 (55%), Gaps = 7/127 (5%)
Frame = -1
Query: 616 ASPTIVSSPKISELHELPRPPTNF--PSXSRLLGLVGYSGPLVPRGQKVSAPNNLVISS- 446
ASP + SSP+I+ELHELPRPP F P S+ GLVG+S PL Q+ S N+V+S+
Sbjct: 374 ASPPLASSPRINELHELPRPPGQFAPPRRSKSPGLVGHSAPLTAWNQERS---NVVVSTN 430
Query: 445 -AASPLPIPPQAMARSFSIPSSGARVTALHSSSALESSHISSISEDIASP---PLTPIAL 278
ASPLP+PP + RS+SIPS R A + +ASP PLTP +L
Sbjct: 431 IVASPLPVPPLVVPRSYSIPSRNQRAMAQQPLPERNQNR-------VASPPPLPLTPASL 483
Query: 277 SNSRPSS 257
N R S
Sbjct: 484 MNLRSLS 490
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,107,913
Number of Sequences: 1393205
Number of extensions: 11036703
Number of successful extensions: 34803
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 32404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34414
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
