Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002933A_C01 KMC002933A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_781094.1| ABC transporter permease protein [Clostridium t... 32 7.9
ref|NP_703739.1| hypothetical protein [Plasmodium falciparum 3D7... 32 7.9
>ref|NP_781094.1| ABC transporter permease protein [Clostridium tetani E88]
gi|28202586|gb|AAO35031.1| ABC transporter permease
protein [Clostridium tetani E88]
Length = 655
Score = 31.6 bits (70), Expect = 7.9
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 17 TKLLFLNFSITFTSMQIIKLGLYYIHTILKTKPNLI--IKHNLL*IRITSLI 166
TKLLF FS+ FT+ G+YY T L T +I +K N + ITS++
Sbjct: 242 TKLLFSQFSVFFTNRLQNNKGIYYKGTNLITLSQIIYKLKDNAKVLFITSIL 293
>ref|NP_703739.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498400|emb|CAD50351.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2752
Score = 31.6 bits (70), Expect = 7.9
Identities = 23/95 (24%), Positives = 39/95 (40%), Gaps = 23/95 (24%)
Frame = +1
Query: 4 YKRKNQTSISQLLHHIHIYAN-----------N*TGIILHTYHPQNQT-----KLNN*T* 135
+ N + + +H H Y N + G +L+ Y+ Q Q + NN +
Sbjct: 2536 HNNNNDSYNYDIYNHFHTYNNCNLYNDDKNELSKKGAVLNRYNEQEQNIPIEHEYNNISY 2595
Query: 136 PTINKNY-------IFDNLQFSIRSPRLYHPSKTN 219
P++ KN DNL +++ + YHP K N
Sbjct: 2596 PSLIKNNKNNSEKKYLDNLSINLKDEKNYHPEKKN 2630
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,615,541
Number of Sequences: 1393205
Number of extensions: 8794063
Number of successful extensions: 15788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15786
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
