Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002919A_C01 KMC002919A_c01
(751 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06015 hypothetical protein T25K17.120 - Arabidopsis thalia... 79 9e-14
ref|NP_567743.1| putative protein; protein id: At4g26310.1, supp... 79 9e-14
ref|NP_104921.1| elongation factor P [Mesorhizobium loti] gi|213... 64 3e-09
gb|ZP_00095492.1| hypothetical protein [Novosphingobium aromatic... 64 3e-09
gb|AAD56928.1|AF180145_20 elongation factor P efp [Zymomonas mob... 63 4e-09
>pir||T06015 hypothetical protein T25K17.120 - Arabidopsis thaliana
gi|4539427|emb|CAB38960.1| putative protein [Arabidopsis
thaliana] gi|7269483|emb|CAB79486.1| putative protein
[Arabidopsis thaliana]
Length = 212
Score = 78.6 bits (192), Expect = 9e-14
Identities = 37/76 (48%), Positives = 56/76 (73%), Gaps = 6/76 (7%)
Frame = -3
Query: 746 MKVKVQLYDEKPLSASVPKRVTRTVKEE------IAATPRNKKVVLDNGLTVEVPPHIVA 585
MKV++QLYD + LSAS+PK +T TV E + + PR K+ +LDNG T++VP ++ A
Sbjct: 135 MKVQLQLYDGRALSASIPKHITCTVVETQLPMKGLTSAPRYKRALLDNGSTIQVPSYLEA 194
Query: 584 GDAIVVNTEEDSYIER 537
G+ IV+NTE+DS+++R
Sbjct: 195 GEKIVINTEDDSFVKR 210
>ref|NP_567743.1| putative protein; protein id: At4g26310.1, supported by cDNA:
gi_15450783, supported by cDNA: gi_20259883 [Arabidopsis
thaliana] gi|15450784|gb|AAK96663.1| putative protein
[Arabidopsis thaliana] gi|20259884|gb|AAM13289.1|
putative protein [Arabidopsis thaliana]
Length = 258
Score = 78.6 bits (192), Expect = 9e-14
Identities = 37/76 (48%), Positives = 56/76 (73%), Gaps = 6/76 (7%)
Frame = -3
Query: 746 MKVKVQLYDEKPLSASVPKRVTRTVKEE------IAATPRNKKVVLDNGLTVEVPPHIVA 585
MKV++QLYD + LSAS+PK +T TV E + + PR K+ +LDNG T++VP ++ A
Sbjct: 180 MKVQLQLYDGRALSASIPKHITCTVVETQLPMKGLTSAPRYKRALLDNGSTIQVPSYLEA 239
Query: 584 GDAIVVNTEEDSYIER 537
G+ IV+NTE+DS+++R
Sbjct: 240 GEKIVINTEDDSFVKR 255
>ref|NP_104921.1| elongation factor P [Mesorhizobium loti]
gi|21362515|sp|Q98F60|EFP1_RHILO Elongation factor P 1
(EF-P 1) gi|14024103|dbj|BAB50707.1| elongation factor P
[Mesorhizobium loti]
Length = 188
Score = 63.5 bits (153), Expect = 3e-09
Identities = 35/78 (44%), Positives = 47/78 (59%), Gaps = 6/78 (7%)
Frame = -3
Query: 749 GMKVKVQLYDEKPLSASVPKRVTRTVKEEI------AATPRNKKVVLDNGLTVEVPPHIV 588
GM V VQLY+E+P+ S+P +VT T+ E A K VL NG+ V VPP I
Sbjct: 110 GMMVTVQLYEERPIGISLPDQVTLTITEADPVVKGQTAAASYKPAVLKNGIRVLVPPFIG 169
Query: 587 AGDAIVVNTEEDSYIERA 534
AG+ I+V+T E +Y+ RA
Sbjct: 170 AGERIIVDTNEITYVRRA 187
>gb|ZP_00095492.1| hypothetical protein [Novosphingobium aromaticivorans]
Length = 187
Score = 63.5 bits (153), Expect = 3e-09
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
Frame = -3
Query: 749 GMKVKVQLYDEKPLSASVPKRVTRTVKEEIA------ATPRNKKVVLDNGLTVEVPPHIV 588
GM V +++YDE+P+S +P++V T+ E A A+ K +LDNG+ V VPPHI
Sbjct: 109 GMTVLLEMYDERPISVQLPEQVEATIVEADAVVKGQTASSSYKPAILDNGVRVMVPPHIE 168
Query: 587 AGDAIVVNTEEDSYIERA 534
+G IVV+ E SY+ +A
Sbjct: 169 SGTRIVVDVYERSYVGKA 186
>gb|AAD56928.1|AF180145_20 elongation factor P efp [Zymomonas mobilis]
Length = 187
Score = 63.2 bits (152), Expect = 4e-09
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Frame = -3
Query: 749 GMKVKVQLYDEKPLSASVPKRVTRTVKEEIA------ATPRNKKVVLDNGLTVEVPPHIV 588
GM V ++LY+EKP+S +P++V + E A A+ K +LDNG+ V VPPHI
Sbjct: 109 GMDVVMELYEEKPISVQLPEQVEAEIVEADAVVKGQTASSSYKPAILDNGVRVMVPPHIT 168
Query: 587 AGDAIVVNTEEDSYIERA 534
AG I+V+ Y++RA
Sbjct: 169 AGTRIIVDVNTQEYVKRA 186
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,657,724
Number of Sequences: 1393205
Number of extensions: 12843145
Number of successful extensions: 29984
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 28525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29923
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
