Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002916A_C01 KMC002916A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564010.1| expressed protein; protein id: At1g16880.1, sup... 127 3e-40
gb|AAM64912.1| unknown [Arabidopsis thaliana] 104 6e-28
ref|NP_196094.1| putative protein; protein id: At5g04740.1, supp... 104 6e-28
ref|NP_201390.1| uridylyl transferases-like; protein id: At5g658... 42 0.005
gb|AAO38475.1| putative ACT domain containing protein [Oryza sat... 39 0.041
>ref|NP_564010.1| expressed protein; protein id: At1g16880.1, supported by cDNA:
gi_14423501 [Arabidopsis thaliana]
gi|25344189|pir||B86304 hypothetical protein F6I1.12
[imported] - Arabidopsis thaliana
gi|9802776|gb|AAF99845.1|AC051629_12 Unknown protein
[Arabidopsis thaliana]
gi|14423502|gb|AAK62433.1|AF386988_1 Unknown protein
[Arabidopsis thaliana]
Length = 290
Score = 127 bits (319), Expect(2) = 3e-40
Identities = 60/75 (80%), Positives = 70/75 (93%)
Frame = -2
Query: 544 AFGLLPPKEQVDVDIATHISISDDGPDRSLLYVEAADRPGLLVDLVKIITDIDLAVESGE 365
AFG+LPP E +DVDIATHI+I DDGPDRSLL++E+ADRPGLLV+LVKII+DI +AVESGE
Sbjct: 184 AFGVLPPTEPIDVDIATHITIEDDGPDRSLLFIESADRPGLLVELVKIISDISVAVESGE 243
Query: 364 FDTEGLLAKAKFHVT 320
FDTEGLLAK KFHV+
Sbjct: 244 FDTEGLLAKVKFHVS 258
Score = 59.3 bits (142), Expect(2) = 3e-40
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = -3
Query: 318 YKGKAIIKPLQQVLANSLRYFLRRPTTEESSF 223
Y+ KA+IKPLQQVLANSLRYFLRRP+T+ESSF
Sbjct: 259 YRNKALIKPLQQVLANSLRYFLRRPSTDESSF 290
>gb|AAM64912.1| unknown [Arabidopsis thaliana]
Length = 301
Score = 104 bits (260), Expect(2) = 6e-28
Identities = 45/77 (58%), Positives = 64/77 (82%)
Frame = -2
Query: 541 FGLLPPKEQVDVDIATHISISDDGPDRSLLYVEAADRPGLLVDLVKIITDIDLAVESGEF 362
FG+ P++++DVDIATHI + +DGP RSLL +E ADRPGL+V+++K++ D+++ VES E
Sbjct: 196 FGIKAPEKKIDVDIATHIHVKEDGPKRSLLVIETADRPGLVVEMIKVMADVNIDVESAEI 255
Query: 361 DTEGLLAKAKFHVTLQG 311
DTEGL+AK KFHV+ QG
Sbjct: 256 DTEGLVAKDKFHVSYQG 272
Score = 40.8 bits (94), Expect(2) = 6e-28
Identities = 18/32 (56%), Positives = 24/32 (74%)
Frame = -3
Query: 318 YKGKAIIKPLQQVLANSLRYFLRRPTTEESSF 223
Y+G+A+ + L QVL N LRYFLRRP T+ S+
Sbjct: 270 YQGQALNRSLSQVLVNCLRYFLRRPETDIDSY 301
Score = 38.9 bits (89), Expect = 0.041
Identities = 20/72 (27%), Positives = 37/72 (50%), Gaps = 3/72 (4%)
Frame = -2
Query: 526 PKEQVDVDIATHISI---SDDGPDRSLLYVEAADRPGLLVDLVKIITDIDLAVESGEFDT 356
PK + D D+ + D P+ +++ + +R G L+D ++ + D+ L V G T
Sbjct: 83 PKSEDDDDVVPMPMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVST 142
Query: 355 EGLLAKAKFHVT 320
EG + + KF +T
Sbjct: 143 EGSIKQTKFSIT 154
>ref|NP_196094.1| putative protein; protein id: At5g04740.1, supported by cDNA:
34592., supported by cDNA: gi_18252932 [Arabidopsis
thaliana] gi|11281139|pir||T48470 hypothetical protein
T1E3.100 - Arabidopsis thaliana
gi|7413536|emb|CAB86016.1| putative protein [Arabidopsis
thaliana] gi|9758449|dbj|BAB08978.1|
gene_id:MUK11.6~unknown protein [Arabidopsis thaliana]
gi|18252933|gb|AAL62393.1| putative protein [Arabidopsis
thaliana] gi|21389645|gb|AAM48021.1| putative protein
[Arabidopsis thaliana]
Length = 301
Score = 104 bits (260), Expect(2) = 6e-28
Identities = 45/77 (58%), Positives = 64/77 (82%)
Frame = -2
Query: 541 FGLLPPKEQVDVDIATHISISDDGPDRSLLYVEAADRPGLLVDLVKIITDIDLAVESGEF 362
FG+ P++++DVDIATHI + +DGP RSLL +E ADRPGL+V+++K++ D+++ VES E
Sbjct: 196 FGIKAPEKKIDVDIATHIHVKEDGPKRSLLVIETADRPGLVVEMIKVMADVNIDVESAEI 255
Query: 361 DTEGLLAKAKFHVTLQG 311
DTEGL+AK KFHV+ QG
Sbjct: 256 DTEGLVAKDKFHVSYQG 272
Score = 40.8 bits (94), Expect(2) = 6e-28
Identities = 18/32 (56%), Positives = 24/32 (74%)
Frame = -3
Query: 318 YKGKAIIKPLQQVLANSLRYFLRRPTTEESSF 223
Y+G+A+ + L QVL N LRYFLRRP T+ S+
Sbjct: 270 YQGQALNRSLSQVLVNCLRYFLRRPETDIDSY 301
Score = 38.9 bits (89), Expect = 0.041
Identities = 20/72 (27%), Positives = 37/72 (50%), Gaps = 3/72 (4%)
Frame = -2
Query: 526 PKEQVDVDIATHISI---SDDGPDRSLLYVEAADRPGLLVDLVKIITDIDLAVESGEFDT 356
PK + D D+ + D P+ +++ + +R G L+D ++ + D+ L V G T
Sbjct: 83 PKSEDDDDVVPMPMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVST 142
Query: 355 EGLLAKAKFHVT 320
EG + + KF +T
Sbjct: 143 EGSIKQTKFSIT 154
>ref|NP_201390.1| uridylyl transferases-like; protein id: At5g65890.1, supported by
cDNA: gi_13430687 [Arabidopsis thaliana]
gi|9759573|dbj|BAB11136.1| uridylyl transferases-like
[Arabidopsis thaliana]
gi|13430688|gb|AAK25966.1|AF360256_1 putative uridylyl
transferases [Arabidopsis thaliana]
gi|14532892|gb|AAK64128.1| putative uridylyl
transferases [Arabidopsis thaliana]
gi|22138094|gb|AAM93427.1| ACR1 [Arabidopsis thaliana]
Length = 477
Score = 42.0 bits (97), Expect = 0.005
Identities = 22/72 (30%), Positives = 41/72 (56%)
Frame = -2
Query: 529 PPKEQVDVDIATHISISDDGPDRSLLYVEAADRPGLLVDLVKIITDIDLAVESGEFDTEG 350
PP+ VD +D P+ +L+ V++A++ G+L+D+V+++ D+DL + ++G
Sbjct: 23 PPRVCVD---------NDSDPECTLIKVDSANKYGILLDMVQVLADLDLVISKCYISSDG 73
Query: 349 LLAKAKFHVTLQ 314
FHVT Q
Sbjct: 74 EWFMDVFHVTDQ 85
>gb|AAO38475.1| putative ACT domain containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 512
Score = 38.9 bits (89), Expect = 0.041
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = -2
Query: 466 DRSLLYVEAADRPGLLVDLVKIITDIDLAVESGEFDTEGLLAKAKFHVTLQ 314
D +L+ V++ +R G+L+++V+++TD+DL + ++G FHVT Q
Sbjct: 34 DCTLVKVDSVNRDGVLLEMVQLLTDLDLVISKSYISSDGGWLMDVFHVTDQ 84
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,882,814
Number of Sequences: 1393205
Number of extensions: 8579073
Number of successful extensions: 18434
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 17877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18417
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
