Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002912A_C01 KMC002912A_c01
(644 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565484.1| expressed protein; protein id: At2g20760.1, sup... 121 9e-27
gb|AAM61043.1| unknown [Arabidopsis thaliana] 121 9e-27
ref|NP_565921.1| expressed protein; protein id: At2g40060.1, sup... 79 7e-14
gb|AAM65809.1| unknown [Arabidopsis thaliana] 79 7e-14
pir||T51160 hypothetical protein [imported] - Arabidopsis thalia... 74 2e-12
>ref|NP_565484.1| expressed protein; protein id: At2g20760.1, supported by cDNA:
108956., supported by cDNA: gi_15982816, supported by
cDNA: gi_16323100 [Arabidopsis thaliana]
gi|25411992|pir||A84593 hypothetical protein At2g20760
[imported] - Arabidopsis thaliana
gi|4454472|gb|AAD20919.1| expressed protein [Arabidopsis
thaliana] gi|15982817|gb|AAL09756.1| At2g20760/F5H14.27
[Arabidopsis thaliana] gi|16323101|gb|AAL15285.1|
At2g20760/F5H14.27 [Arabidopsis thaliana]
Length = 338
Score = 121 bits (303), Expect = 9e-27
Identities = 57/84 (67%), Positives = 64/84 (75%)
Frame = -3
Query: 642 RGKKDQDKKPSITVVQGPKPGKPTDLSRMRQILLKLKHTPPPHMIPPPPAPAKDAKDAKD 463
RGKKD DKKPS+ V+QGPKPGKPTDL RMRQI LKLK PPPHM+PPPP PAKDAKD KD
Sbjct: 203 RGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLKLKTNPPPHMMPPPP-PAKDAKDGKD 261
Query: 462 TKDGKETASQATGSAAEVASEPKD 391
KDGK+ + G A+ + KD
Sbjct: 262 AKDGKDAKTGKDGKDAKGGKDAKD 285
>gb|AAM61043.1| unknown [Arabidopsis thaliana]
Length = 338
Score = 121 bits (303), Expect = 9e-27
Identities = 57/84 (67%), Positives = 64/84 (75%)
Frame = -3
Query: 642 RGKKDQDKKPSITVVQGPKPGKPTDLSRMRQILLKLKHTPPPHMIPPPPAPAKDAKDAKD 463
RGKKD DKKPS+ V+QGPKPGKPTDL RMRQI LKLK PPPHM+PPPP PAKDAKD KD
Sbjct: 203 RGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLKLKTNPPPHMMPPPP-PAKDAKDGKD 261
Query: 462 TKDGKETASQATGSAAEVASEPKD 391
KDGK+ + G A+ + KD
Sbjct: 262 AKDGKDAKAGKDGKDAKGGKDAKD 285
>ref|NP_565921.1| expressed protein; protein id: At2g40060.1, supported by cDNA:
5046., supported by cDNA: gi_20260191 [Arabidopsis
thaliana] gi|25366606|pir||G84824 hypothetical protein
At2g40060 [imported] - Arabidopsis thaliana
gi|2088662|gb|AAB95291.1| expressed protein [Arabidopsis
thaliana] gi|20260192|gb|AAM12994.1| unknown protein
[Arabidopsis thaliana] gi|21387051|gb|AAM47929.1|
unknown protein [Arabidopsis thaliana]
Length = 258
Score = 78.6 bits (192), Expect = 7e-14
Identities = 39/68 (57%), Positives = 49/68 (71%), Gaps = 6/68 (8%)
Frame = -3
Query: 642 RGKKDQD--KKPSITVVQGPKPGKPTDLSRMRQILLKLKHTPPPHM----IPPPPAPAKD 481
RGKK+Q KKP+++V+QGPKPGKPTDL+RMRQIL+KLKH PP H+ PP A
Sbjct: 183 RGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKLTSQPPSEEAAAP 242
Query: 480 AKDAKDTK 457
K+ +TK
Sbjct: 243 PKNVPETK 250
>gb|AAM65809.1| unknown [Arabidopsis thaliana]
Length = 258
Score = 78.6 bits (192), Expect = 7e-14
Identities = 39/68 (57%), Positives = 49/68 (71%), Gaps = 6/68 (8%)
Frame = -3
Query: 642 RGKKDQD--KKPSITVVQGPKPGKPTDLSRMRQILLKLKHTPPPHM----IPPPPAPAKD 481
RGKK+Q KKP+++V+QGPKPGKPTDL+RMRQIL+KLKH PP H+ PP A
Sbjct: 183 RGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKLTSQPPSEEAAAP 242
Query: 480 AKDAKDTK 457
K+ +TK
Sbjct: 243 PKNVPETK 250
>pir||T51160 hypothetical protein [imported] - Arabidopsis thaliana
gi|3068716|gb|AAC14416.1| unknown [Arabidopsis thaliana]
Length = 233
Score = 73.6 bits (179), Expect = 2e-12
Identities = 35/52 (67%), Positives = 40/52 (76%)
Frame = -3
Query: 642 RGKKDQDKKPSITVVQGPKPGKPTDLSRMRQILLKLKHTPPPHMIPPPPAPA 487
RG K K +ITV+QGPKPGKPTDLSRMRQ+L KLKH PP HM P P+P+
Sbjct: 166 RGNKK--KTATITVIQGPKPGKPTDLSRMRQVLTKLKHNPPTHMKPKLPSPS 215
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,969,889
Number of Sequences: 1393205
Number of extensions: 14910328
Number of successful extensions: 148179
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 70797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127280
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
