Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002910A_C01 KMC002910A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL27150.1| bZIP transcription factor [Nicotiana tabacum] 97 9e-20
pir||T07154 bZIP DNA-binding protein HBF-1 - soybean gi|1905785|... 97 9e-20
pir||S16321 light-induced protein CPRF-2 - parsley 80 1e-14
sp|Q99090|CPR2_PETCR Light-inducible protein CPRF-2 gi|1806261|e... 80 1e-14
pir||T03605 probable DNA binding protein - rice gi|1783305|dbj|B... 46 2e-04
>gb|AAL27150.1| bZIP transcription factor [Nicotiana tabacum]
Length = 450
Score = 97.1 bits (240), Expect = 9e-20
Identities = 51/92 (55%), Positives = 61/92 (65%)
Frame = -1
Query: 480 AAVPVPDNSHHQPFYRPVSNNPMPRPDLRVNNGLGDISSIENVQQQNGAAVAGGNKMGQA 301
AAVPV D+ H +Y+ NN MP D R+ NG+ D+ IENV+Q A GGNKMG+
Sbjct: 361 AAVPVQDDPKHH-YYQQPPNNLMPTHDPRIQNGMVDVPPIENVEQNPATAAVGGNKMGRT 419
Query: 300 AAPLQRVASLEHLQKRIRGGVDSCGAPSNGEQ 205
+ +QRVASLEHLQKRIRG V SCG GEQ
Sbjct: 420 TS-MQRVASLEHLQKRIRGEVSSCGTQGRGEQ 450
>pir||T07154 bZIP DNA-binding protein HBF-1 - soybean gi|1905785|emb|CAA71687.1|
G/HBF-1 [Glycine max]
Length = 378
Score = 97.1 bits (240), Expect = 9e-20
Identities = 51/92 (55%), Positives = 61/92 (65%)
Frame = -1
Query: 480 AAVPVPDNSHHQPFYRPVSNNPMPRPDLRVNNGLGDISSIENVQQQNGAAVAGGNKMGQA 301
AAVPV D+ H +Y+ NN MP D R+ NG+ D+ IENV+Q A GGNKMG+
Sbjct: 289 AAVPVQDDPKHH-YYQQPPNNLMPTHDPRIQNGMVDVPPIENVEQNPATAAVGGNKMGRT 347
Query: 300 AAPLQRVASLEHLQKRIRGGVDSCGAPSNGEQ 205
+ +QRVASLEHLQKRIRG V SCG GEQ
Sbjct: 348 TS-MQRVASLEHLQKRIRGEVSSCGTQGRGEQ 378
>pir||S16321 light-induced protein CPRF-2 - parsley
Length = 393
Score = 79.7 bits (195), Expect = 1e-14
Identities = 39/81 (48%), Positives = 55/81 (67%)
Frame = -1
Query: 447 QPFYRPVSNNPMPRPDLRVNNGLGDISSIENVQQQNGAAVAGGNKMGQAAAPLQRVASLE 268
Q FY+P + MP D ++ NGL + ++N+QQ + + GNKM + ++ +QRVASLE
Sbjct: 314 QHFYQPAPTSHMPAQDQKIQNGLLQVPPVDNLQQHSASGPVEGNKMERTSS-MQRVASLE 372
Query: 267 HLQKRIRGGVDSCGAPSNGEQ 205
HLQKRIRGGV SC A +G+Q
Sbjct: 373 HLQKRIRGGVSSCEAQVSGKQ 393
>sp|Q99090|CPR2_PETCR Light-inducible protein CPRF-2 gi|1806261|emb|CAA41453.1|
DNA-binding protein; bZIP type [Petroselinum crispum]
Length = 401
Score = 79.7 bits (195), Expect = 1e-14
Identities = 39/81 (48%), Positives = 55/81 (67%)
Frame = -1
Query: 447 QPFYRPVSNNPMPRPDLRVNNGLGDISSIENVQQQNGAAVAGGNKMGQAAAPLQRVASLE 268
Q FY+P + MP D ++ NGL + ++N+QQ + + GNKM + ++ +QRVASLE
Sbjct: 322 QHFYQPAPTSHMPAQDQKIQNGLLQVPPVDNLQQHSASGPVEGNKMERTSS-MQRVASLE 380
Query: 267 HLQKRIRGGVDSCGAPSNGEQ 205
HLQKRIRGGV SC A +G+Q
Sbjct: 381 HLQKRIRGGVSSCEAQVSGKQ 401
>pir||T03605 probable DNA binding protein - rice gi|1783305|dbj|BAA11431.1| bZIP
protein [Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 46.2 bits (108), Expect = 2e-04
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Frame = -1
Query: 480 AAVPVPDNSHHQPFYRPVSNNPMPRPDLRVNNGLGDI--SSIENVQQQNGAAVAGGNKMG 307
AAVP+ D+ ++ Y +N+ NN + DI S+ E+ NGA AG K+G
Sbjct: 347 AAVPIQDDPNN---YFATNNDIGGN-----NNYMPDIPSSAQEDEDFVNGALAAG--KIG 396
Query: 306 QAAAPLQRVASLEHLQKRIRGGVDSCGAPS 217
+ A+ LQRVASLEHLQKR+ GG S G+ S
Sbjct: 397 RTAS-LQRVASLEHLQKRMCGGPASSGSTS 425
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,186,283
Number of Sequences: 1393205
Number of extensions: 9730428
Number of successful extensions: 22746
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 21827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22725
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
