Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002908A_C01 KMC002908A_c01
(747 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567245.1| bHLH protein; protein id: At4g02590.1, supporte... 229 6e-78
gb|AAM65759.1| putative lipoamide dehydrogenase [Arabidopsis tha... 227 2e-77
gb|AAM10948.1|AF488592_1 putative bHLH transcription factor [Ara... 229 3e-77
ref|NP_563672.1| bHLH protein; protein id: At1g03040.1, supporte... 221 7e-71
pir||B86161 F10O3.14 protein - Arabidopsis thaliana gi|4587574|g... 211 7e-68
>ref|NP_567245.1| bHLH protein; protein id: At4g02590.1, supported by cDNA: 4346.,
supported by cDNA: gi_13605858, supported by cDNA:
gi_20127057 [Arabidopsis thaliana]
gi|7486850|pir||T01090 hypothetical protein T10P11.13 -
Arabidopsis thaliana gi|3892050|gb|AAC78259.1|AAC78259
hypothetical protein [Arabidopsis thaliana]
gi|7269019|emb|CAB80752.1| hypothetical protein
[Arabidopsis thaliana]
gi|13605859|gb|AAK32915.1|AF367328_1 AT4g02590/T10P11_13
[Arabidopsis thaliana] gi|23506061|gb|AAN28890.1|
At4g02590/T10P11_13 [Arabidopsis thaliana]
Length = 310
Score = 229 bits (583), Expect(2) = 6e-78
Identities = 131/186 (70%), Positives = 144/186 (76%), Gaps = 8/186 (4%)
Frame = +1
Query: 49 SGLVGPDIGLAGTAP-MMLQLTSADHGNHHH-LAGGGP--FHAPVYQLGLSLDQGKVVGG 216
+GL G D GL G AP MMLQL S + G+H L G GP FH ++ LGLSLDQGK G
Sbjct: 35 AGLSGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGGSGPTGFHNQMFPLGLSLDQGK---G 91
Query: 217 GGFLKPEDASGSGKRVRDDVVDGRPMN---VYHGQPMSTTMPAAPHPP-AMRPRVRARRG 384
GFL+PE GSGKR DDVVD R + V+HGQPM P+APH P ++RPRVRARRG
Sbjct: 92 PGFLRPEGGHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPRVRARRG 151
Query: 385 QATDPHSIAERLRRERIAERIRA*QELVPSVNKTDRAGMLDEIVDYVKFLRLQVKVLSMS 564
QATDPHSIAERLRRERIAERIRA QELVP+VNKTDRA M+DEIVDYVKFLRLQVKVLSMS
Sbjct: 152 QATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMS 211
Query: 565 RLGGAG 582
RLGGAG
Sbjct: 212 RLGGAG 217
Score = 84.7 bits (208), Expect(2) = 6e-78
Identities = 43/56 (76%), Positives = 50/56 (88%), Gaps = 2/56 (3%)
Frame = +2
Query: 581 GAVAPLVTDIPLSS-VEEEGGEGARN-RPSWDKWSSDGTEKQVAKLMEEKVGAAMQ 742
GAVAPLVTD+PLSS VE+E GEG R +P+W+KWS+DGTE+QVAKLMEE VGAAMQ
Sbjct: 217 GAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQ 272
>gb|AAM65759.1| putative lipoamide dehydrogenase [Arabidopsis thaliana]
Length = 310
Score = 227 bits (579), Expect(2) = 2e-77
Identities = 130/186 (69%), Positives = 143/186 (75%), Gaps = 8/186 (4%)
Frame = +1
Query: 49 SGLVGPDIGLAGTAP-MMLQLTSADHGNHHH-LAGGGP--FHAPVYQLGLSLDQGKVVGG 216
+GL G D GL G AP MMLQL S + G+H L G GP FH ++ LGLSLDQGK G
Sbjct: 35 AGLSGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGGSGPTGFHNQMFPLGLSLDQGK---G 91
Query: 217 GGFLKPEDASGSGKRVRDDVVDGRPMN---VYHGQPMSTTMPAAPHPP-AMRPRVRARRG 384
GFL+PE GSGKR DDVVD R + V+HGQPM P+APH P ++RPRVRARRG
Sbjct: 92 PGFLRPEGGHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPRVRARRG 151
Query: 385 QATDPHSIAERLRRERIAERIRA*QELVPSVNKTDRAGMLDEIVDYVKFLRLQVKVLSMS 564
QATDPHSIAERLRRERIAERIRA QELVP+VNKTDRA M+DEIVDYVKFLRLQVKVLSMS
Sbjct: 152 QATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMS 211
Query: 565 RLGGAG 582
RLGG G
Sbjct: 212 RLGGVG 217
Score = 84.7 bits (208), Expect(2) = 2e-77
Identities = 43/56 (76%), Positives = 50/56 (88%), Gaps = 2/56 (3%)
Frame = +2
Query: 581 GAVAPLVTDIPLSS-VEEEGGEGARN-RPSWDKWSSDGTEKQVAKLMEEKVGAAMQ 742
GAVAPLVTD+PLSS VE+E GEG R +P+W+KWS+DGTE+QVAKLMEE VGAAMQ
Sbjct: 217 GAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQ 272
>gb|AAM10948.1|AF488592_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 310
Score = 229 bits (583), Expect(2) = 3e-77
Identities = 131/186 (70%), Positives = 144/186 (76%), Gaps = 8/186 (4%)
Frame = +1
Query: 49 SGLVGPDIGLAGTAP-MMLQLTSADHGNHHH-LAGGGP--FHAPVYQLGLSLDQGKVVGG 216
+GL G D GL G AP MMLQL S + G+H L G GP FH ++ LGLSLDQGK G
Sbjct: 35 AGLSGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGGSGPTGFHNQMFPLGLSLDQGK---G 91
Query: 217 GGFLKPEDASGSGKRVRDDVVDGRPMN---VYHGQPMSTTMPAAPHPP-AMRPRVRARRG 384
GFL+PE GSGKR DDVVD R + V+HGQPM P+APH P ++RPRVRARRG
Sbjct: 92 PGFLRPEGGHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPRVRARRG 151
Query: 385 QATDPHSIAERLRRERIAERIRA*QELVPSVNKTDRAGMLDEIVDYVKFLRLQVKVLSMS 564
QATDPHSIAERLRRERIAERIRA QELVP+VNKTDRA M+DEIVDYVKFLRLQVKVLSMS
Sbjct: 152 QATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMS 211
Query: 565 RLGGAG 582
RLGGAG
Sbjct: 212 RLGGAG 217
Score = 82.4 bits (202), Expect(2) = 3e-77
Identities = 42/56 (75%), Positives = 49/56 (87%), Gaps = 2/56 (3%)
Frame = +2
Query: 581 GAVAPLVTDIPLSS-VEEEGGEGARN-RPSWDKWSSDGTEKQVAKLMEEKVGAAMQ 742
GAVAPLVTD+PLSS V +E GEG R +P+W+KWS+DGTE+QVAKLMEE VGAAMQ
Sbjct: 217 GAVAPLVTDMPLSSSVXDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQ 272
>ref|NP_563672.1| bHLH protein; protein id: At1g03040.1, supported by cDNA:
gi_15450778 [Arabidopsis thaliana]
gi|15450779|gb|AAK96661.1| Unknown protein [Arabidopsis
thaliana] gi|21387097|gb|AAM47952.1| unknown protein
[Arabidopsis thaliana]
gi|21735477|gb|AAL55714.2|AF251692_1 putative
transcription factor BHLH7 [Arabidopsis thaliana]
Length = 302
Score = 221 bits (562), Expect(2) = 7e-71
Identities = 126/187 (67%), Positives = 144/187 (76%), Gaps = 9/187 (4%)
Frame = +1
Query: 49 SGLVGPDIGLAGTAPMMLQLTSADHGNHHH---LAGGGP--FHAPVYQLGLSLDQGKVVG 213
SGL G IG G PMMLQL S + GNH+H + GGGP FH ++ LGLSLDQGK
Sbjct: 37 SGLSG--IGGVGPPPMMLQLGSGNEGNHNHMGAIGGGGPVGFHNQMFPLGLSLDQGK--- 91
Query: 214 GGGFLKPEDASGSGKRVRDDVVDGRPMN---VYHGQPMSTTMPAAPHPPA-MRPRVRARR 381
G GFLKP++ +GKR +DDV+D R + ++HGQPMS P PH + +RPRVRARR
Sbjct: 92 GHGFLKPDE---TGKRFQDDVLDNRCSSMKPIFHGQPMSQPAPPMPHQQSTIRPRVRARR 148
Query: 382 GQATDPHSIAERLRRERIAERIRA*QELVPSVNKTDRAGMLDEIVDYVKFLRLQVKVLSM 561
GQATDPHSIAERLRRERIAERIR+ QELVP+VNKTDRA M+DEIVDYVKFLRLQVKVLSM
Sbjct: 149 GQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSM 208
Query: 562 SRLGGAG 582
SRLGGAG
Sbjct: 209 SRLGGAG 215
Score = 69.3 bits (168), Expect(2) = 7e-71
Identities = 35/54 (64%), Positives = 42/54 (76%)
Frame = +2
Query: 581 GAVAPLVTDIPLSSVEEEGGEGARNRPSWDKWSSDGTEKQVAKLMEEKVGAAMQ 742
GAVAPLVT++PLSS E+ + W+KWS+DGTE+QVAKLMEE VGAAMQ
Sbjct: 215 GAVAPLVTEMPLSSSVEDETQAV-----WEKWSNDGTERQVAKLMEENVGAAMQ 263
>pir||B86161 F10O3.14 protein - Arabidopsis thaliana
gi|4587574|gb|AAD25805.1|AC006550_13 Contains PF|00010
helix-loop-helix DNA-binding domain. ESTs gb|T45640 and
gb|T22783 come from this gene. [Arabidopsis thaliana]
Length = 297
Score = 211 bits (536), Expect(2) = 7e-68
Identities = 123/184 (66%), Positives = 140/184 (75%), Gaps = 6/184 (3%)
Frame = +1
Query: 49 SGLVGPDIGLAGTAPMMLQLTSADHGNHHH---LAGGGP--FHAPVYQLGLSLDQGKVVG 213
SGL G IG G PMMLQL S + GNH+H + GGGP FH ++ LGLSLDQGK
Sbjct: 37 SGLSG--IGGVGPPPMMLQLGSGNEGNHNHMGAIGGGGPVGFHNQMFPLGLSLDQGK--- 91
Query: 214 GGGFLKPEDASGSGKRVRDDVVDGRPMNVYHGQPMSTTMPAAPHPPA-MRPRVRARRGQA 390
G GFLKP++ +GKR +DDV+D R ++ PMS P PH + +RPRVRARRGQA
Sbjct: 92 GHGFLKPDE---TGKRFQDDVLDNRCSSM--KPPMSQPAPPMPHQQSTIRPRVRARRGQA 146
Query: 391 TDPHSIAERLRRERIAERIRA*QELVPSVNKTDRAGMLDEIVDYVKFLRLQVKVLSMSRL 570
TDPHSIAERLRRERIAERIR+ QELVP+VNKTDRA M+DEIVDYVKFLRLQVKVLSMSRL
Sbjct: 147 TDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRL 206
Query: 571 GGAG 582
GGAG
Sbjct: 207 GGAG 210
Score = 69.3 bits (168), Expect(2) = 7e-68
Identities = 35/54 (64%), Positives = 42/54 (76%)
Frame = +2
Query: 581 GAVAPLVTDIPLSSVEEEGGEGARNRPSWDKWSSDGTEKQVAKLMEEKVGAAMQ 742
GAVAPLVT++PLSS E+ + W+KWS+DGTE+QVAKLMEE VGAAMQ
Sbjct: 210 GAVAPLVTEMPLSSSVEDETQAV-----WEKWSNDGTERQVAKLMEENVGAAMQ 258
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 727,361,461
Number of Sequences: 1393205
Number of extensions: 18132935
Number of successful extensions: 72569
Number of sequences better than 10.0: 430
Number of HSP's better than 10.0 without gapping: 63885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72105
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
