Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002907A_C01 KMC002907A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187541.1| putative oxysterol-binding protein; protein id:... 118 2e-40
ref|NP_195830.1| putative protein; protein id: At5g02100.1, supp... 117 4e-40
ref|NP_200750.1| oxysterol-binding protein - like; protein id: A... 117 3e-37
dbj|BAA97478.1| oxysterol-binding protein [Arabidopsis thaliana] 117 3e-37
gb|EAA36483.1| hypothetical protein [Neurospora crassa] 60 1e-08
>ref|NP_187541.1| putative oxysterol-binding protein; protein id: At3g09300.1,
supported by cDNA: gi_17065253, supported by cDNA:
gi_20260049 [Arabidopsis thaliana]
gi|6478922|gb|AAF14027.1|AC011436_11 putative
oxysterol-binding protein [Arabidopsis thaliana]
gi|17065254|gb|AAL32781.1| putative oxysterol-binding
protein [Arabidopsis thaliana]
gi|20260050|gb|AAM13372.1| putative oxysterol-binding
protein [Arabidopsis thaliana]
Length = 458
Score = 118 bits (296), Expect(2) = 2e-40
Identities = 56/73 (76%), Positives = 62/73 (84%)
Frame = -3
Query: 529 SFDTAPKKLLASDSRLRPDRMALEKGDLSTSGYEKSSLEERQRAEKKNREAKGHKFTPRW 350
SFDTAPKKLL SDSRLRPDR ALE GD+S SGYEKSS+EERQRAEK+ RE KG FTP+W
Sbjct: 344 SFDTAPKKLLPSDSRLRPDRYALEMGDMSKSGYEKSSMEERQRAEKRTREEKGQAFTPKW 403
Query: 349 FDLTDEVATTPLG 311
FD+T+EV TP G
Sbjct: 404 FDVTEEVTATPWG 416
Score = 68.9 bits (167), Expect(2) = 2e-40
Identities = 27/43 (62%), Positives = 35/43 (80%)
Frame = -1
Query: 318 PWGELEVYQYHGKYTAHRAAIDDSSDSTDDSRTEFNPWQFDNL 190
PWG+LEVYQ++GKY+ HRAA D+S D+TD +FNPWQF +L
Sbjct: 414 PWGDLEVYQFNGKYSEHRAAADNSEDNTDPKSIQFNPWQFQDL 456
>ref|NP_195830.1| putative protein; protein id: At5g02100.1, supported by cDNA:
gi_15292810, supported by cDNA: gi_20258866 [Arabidopsis
thaliana] gi|11358401|pir||T48231 hypothetical protein
T7H20.150 - Arabidopsis thaliana
gi|7340684|emb|CAB82983.1| putative protein [Arabidopsis
thaliana] gi|15292811|gb|AAK92774.1| unknown protein
[Arabidopsis thaliana] gi|20258867|gb|AAM14105.1|
putative oxysterol-binding protein [Arabidopsis
thaliana]
Length = 453
Score = 117 bits (293), Expect(2) = 4e-40
Identities = 56/73 (76%), Positives = 63/73 (85%)
Frame = -3
Query: 529 SFDTAPKKLLASDSRLRPDRMALEKGDLSTSGYEKSSLEERQRAEKKNREAKGHKFTPRW 350
SFDTAPKKLL+SDSRLRPDR ALE GD+S SG+EKSSLE+RQRAEKK+RE KG KF P+W
Sbjct: 339 SFDTAPKKLLSSDSRLRPDRYALEMGDMSKSGFEKSSLEDRQRAEKKSREEKGQKFAPKW 398
Query: 349 FDLTDEVATTPLG 311
FD T+EV TP G
Sbjct: 399 FDETEEVTPTPWG 411
Score = 68.9 bits (167), Expect(2) = 4e-40
Identities = 27/45 (60%), Positives = 36/45 (80%)
Frame = -1
Query: 318 PWGELEVYQYHGKYTAHRAAIDDSSDSTDDSRTEFNPWQFDNLEA 184
PWG+LEVYQ++GKY+ HRA ++S D+TD T+FNPWQF +L A
Sbjct: 409 PWGDLEVYQFNGKYSVHRATAENSEDTTDVKLTQFNPWQFQDLSA 453
>ref|NP_200750.1| oxysterol-binding protein - like; protein id: At5g59420.1,
supported by cDNA: gi_15450785 [Arabidopsis thaliana]
gi|15450786|gb|AAK96664.1| oxysterol-binding protein
[Arabidopsis thaliana] gi|23197814|gb|AAN15434.1|
oxysterol-binding protein [Arabidopsis thaliana]
Length = 457
Score = 117 bits (294), Expect(2) = 3e-37
Identities = 56/73 (76%), Positives = 62/73 (84%)
Frame = -3
Query: 529 SFDTAPKKLLASDSRLRPDRMALEKGDLSTSGYEKSSLEERQRAEKKNREAKGHKFTPRW 350
SFDTAP KLLASDSR+RPDR +LE+GDLS +G EK SLEERQRAEK+ RE KG KFTPRW
Sbjct: 339 SFDTAPAKLLASDSRIRPDRYSLEQGDLSKAGSEKHSLEERQRAEKRTRETKGQKFTPRW 398
Query: 349 FDLTDEVATTPLG 311
FDLTDE+ TP G
Sbjct: 399 FDLTDEITPTPWG 411
Score = 58.9 bits (141), Expect(2) = 3e-37
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = -1
Query: 318 PWGELEVYQYHGKYTAHRAAIDDS---SDSTDDSRTEFNPWQFDNLEAE 181
PWG++EVYQY+GKY HR + S S+ TD EFNPWQ+ N+ E
Sbjct: 409 PWGDIEVYQYNGKYNEHRDTAESSSSASNETDLKSIEFNPWQYGNISTE 457
>dbj|BAA97478.1| oxysterol-binding protein [Arabidopsis thaliana]
Length = 453
Score = 117 bits (294), Expect(2) = 3e-37
Identities = 56/73 (76%), Positives = 62/73 (84%)
Frame = -3
Query: 529 SFDTAPKKLLASDSRLRPDRMALEKGDLSTSGYEKSSLEERQRAEKKNREAKGHKFTPRW 350
SFDTAP KLLASDSR+RPDR +LE+GDLS +G EK SLEERQRAEK+ RE KG KFTPRW
Sbjct: 335 SFDTAPAKLLASDSRIRPDRYSLEQGDLSKAGSEKHSLEERQRAEKRTRETKGQKFTPRW 394
Query: 349 FDLTDEVATTPLG 311
FDLTDE+ TP G
Sbjct: 395 FDLTDEITPTPWG 407
Score = 58.9 bits (141), Expect(2) = 3e-37
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = -1
Query: 318 PWGELEVYQYHGKYTAHRAAIDDS---SDSTDDSRTEFNPWQFDNLEAE 181
PWG++EVYQY+GKY HR + S S+ TD EFNPWQ+ N+ E
Sbjct: 405 PWGDIEVYQYNGKYNEHRDTAESSSSASNETDLKSIEFNPWQYGNISTE 453
>gb|EAA36483.1| hypothetical protein [Neurospora crassa]
Length = 1238
Score = 60.5 bits (145), Expect = 1e-08
Identities = 27/53 (50%), Positives = 37/53 (68%)
Frame = -3
Query: 505 LLASDSRLRPDRMALEKGDLSTSGYEKSSLEERQRAEKKNREAKGHKFTPRWF 347
L +DSR RPD+ A+E+G+ + EK+ LEE QRA +K RE+KG +F P WF
Sbjct: 1141 LAPTDSRFRPDQRAMEEGEYDFAATEKNRLEEAQRARRKARESKGEEFKPAWF 1193
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,951,679
Number of Sequences: 1393205
Number of extensions: 8729920
Number of successful extensions: 26637
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 25392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26608
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
