Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002898A_C01 KMC002898A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173435.1| hypothetical protein; protein id: At1g20070.1 [... 57 1e-07
ref|NP_188794.1| hypothetical protein; protein id: At3g21570.1 [... 43 0.003
dbj|BAC06284.1| OSJNBb0093M23.11 [Oryza sativa (japonica cultiva... 40 0.023
ref|NP_680565.1| unknown protein; protein id: At4g02715.1 [Arabi... 36 0.33
gb|AAM28273.1| PRAS-rich protein [Ananas comosus] 35 0.56
>ref|NP_173435.1| hypothetical protein; protein id: At1g20070.1 [Arabidopsis
thaliana] gi|25373053|pir||C86334 hypothetical protein
T20H2.15 - Arabidopsis thaliana
gi|8778991|gb|AAF79906.1|AC022472_15 Contains similarity
to nuclear protein ZAP from Mus musculus gb|AB033168.
ESTs gb|AV521697, gb|AV440130 come from this gene.
[Arabidopsis thaliana] gi|26450344|dbj|BAC42288.1|
unknown protein [Arabidopsis thaliana]
Length = 193
Score = 57.4 bits (137), Expect = 1e-07
Identities = 27/48 (56%), Positives = 36/48 (74%)
Frame = -1
Query: 483 LISPPPSSLPLPKFSLRSKLSCNAEASAAGSVVDDDGATNNLRRLLRL 340
L+SPPPSSLP+P+FS++ KL CN EA+ V ATNN+RR+L+L
Sbjct: 150 LLSPPPSSLPMPRFSIKPKLRCNVEAAGKSDV-----ATNNIRRVLQL 192
>ref|NP_188794.1| hypothetical protein; protein id: At3g21570.1 [Arabidopsis
thaliana] gi|11994393|dbj|BAB02352.1|
gene_id:MIL23.14~unknown protein [Arabidopsis thaliana]
Length = 136
Score = 43.1 bits (100), Expect = 0.003
Identities = 28/58 (48%), Positives = 34/58 (58%)
Frame = -1
Query: 513 DMFLGSSGFNLISPPPSSLPLPKFSLRSKLSCNAEASAAGSVVDDDGATNNLRRLLRL 340
D++ GSS F +SP PSSLPLP FS + S S DD A+ +LRRLLRL
Sbjct: 84 DIYAGSSIF-AVSPAPSSLPLPSFSKKKAKSQVVVVSI------DDSASQDLRRLLRL 134
>dbj|BAC06284.1| OSJNBb0093M23.11 [Oryza sativa (japonica cultivar-group)]
Length = 288
Score = 40.0 bits (92), Expect = 0.023
Identities = 22/47 (46%), Positives = 28/47 (58%)
Frame = -1
Query: 480 ISPPPSSLPLPKFSLRSKLSCNAEASAAGSVVDDDGATNNLRRLLRL 340
+SP PSS+PLP+F R AA + DD AT +LRR+LRL
Sbjct: 79 VSPEPSSVPLPQFPFR---------KAAVTAAVDDAATRDLRRMLRL 116
>ref|NP_680565.1| unknown protein; protein id: At4g02715.1 [Arabidopsis thaliana]
gi|22531271|gb|AAM97139.1| unknown protein [Arabidopsis
thaliana] gi|26451580|dbj|BAC42887.1| unknown protein
[Arabidopsis thaliana]
Length = 205
Score = 36.2 bits (82), Expect = 0.33
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = -1
Query: 477 SPPPSSLPLPKFSLRSKLSCNAEASAAGSVVD 382
SPPP+S+P+PKFSL+ K + + A S VD
Sbjct: 131 SPPPASVPIPKFSLQQKRTVSLTFPAPDSAVD 162
>gb|AAM28273.1| PRAS-rich protein [Ananas comosus]
Length = 129
Score = 35.4 bits (80), Expect = 0.56
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = -1
Query: 543 VVLTSKEEPVDMFLGSSGFNLISPPPSSLPLPKFSLRSKLSCNAEASAAGSVVD----DD 376
++ K + +M+ GS+ F+ SP PSS+PLP F + + ++ +S++ + D
Sbjct: 60 IIKYRKTKMEEMYAGSA-FSA-SPAPSSVPLPSFRVSRREPSSSSSSSSPPPPEKQAVDY 117
Query: 375 GATNNLRRLLRL 340
AT +LRR+LRL
Sbjct: 118 AATRDLRRILRL 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,073,123
Number of Sequences: 1393205
Number of extensions: 11949437
Number of successful extensions: 37409
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 35537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37371
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
