Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002897A_C01 KMC002897A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565392.1| expressed protein; protein id: At2g16760.1, sup... 130 3e-34
gb|AAO37168.1| hypothetical protein [Arabidopsis thaliana] 132 6e-34
ref|NP_182259.1| hypothetical protein; protein id: At2g47370.1 [... 132 6e-34
ref|NP_178250.1| hypothetical protein; protein id: At2g01410.1 [... 40 0.026
ref|NP_198218.1| putative protein; protein id: At5g28660.1 [Arab... 37 0.17
>ref|NP_565392.1| expressed protein; protein id: At2g16760.1, supported by cDNA:
118464. [Arabidopsis thaliana] gi|25370644|pir||H84543
hypothetical protein At2g16760 [imported] - Arabidopsis
thaliana gi|4581119|gb|AAD24609.1| expressed protein
[Arabidopsis thaliana] gi|21537036|gb|AAM61377.1|
unknown [Arabidopsis thaliana]
gi|26451541|dbj|BAC42868.1| unknown protein [Arabidopsis
thaliana] gi|28973387|gb|AAO64018.1| unknown protein
[Arabidopsis thaliana]
Length = 327
Score = 130 bits (328), Expect(3) = 3e-34
Identities = 67/105 (63%), Positives = 78/105 (73%), Gaps = 4/105 (3%)
Frame = -3
Query: 555 WYKTFFGLNGIVYHPDGFLIVIHTFSGNLFKIDLAKGE---EVKIIKVEGGPLYFGDGLE 385
WY LNGIVYHPDGFLIVIHTFSG L+KIDL G+ +V +I V GG L FGDGLE
Sbjct: 195 WYNNLVALNGIVYHPDGFLIVIHTFSGYLYKIDLTNGDVSNQVSVIDVSGGTLRFGDGLE 254
Query: 384 LLSPNKLVVAGSPSGRLVESADGWDTASVVATF-SGPKHRLATAS 253
LLSP K+VVAGS S +LVES+DGW TASV F SG HR+ +++
Sbjct: 255 LLSPTKIVVAGSSSTKLVESSDGWRTASVTGWFSSGMVHRVVSSA 299
Score = 33.1 bits (74), Expect(3) = 3e-34
Identities = 13/21 (61%), Positives = 18/21 (84%)
Frame = -1
Query: 254 ATVKDGKVYLNHMLGMGYPQK 192
ATVK+G+VYLNH++G G +K
Sbjct: 299 ATVKEGRVYLNHIVGFGSKKK 319
Score = 23.1 bits (48), Expect(3) = 3e-34
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2
Query: 196 KKKHAIVEAVF 164
KKKH +VEAVF
Sbjct: 317 KKKHVLVEAVF 327
>gb|AAO37168.1| hypothetical protein [Arabidopsis thaliana]
Length = 330
Score = 132 bits (333), Expect(3) = 6e-34
Identities = 67/105 (63%), Positives = 79/105 (74%), Gaps = 4/105 (3%)
Frame = -3
Query: 555 WYKTFFGLNGIVYHPDGFLIVIHTFSGNLFKIDLAKGE---EVKIIKVEGGPLYFGDGLE 385
WY F LNGIVYHP+GFLIVIHTFSG L+KID+ G+ +V +I V GG L FGDGLE
Sbjct: 198 WYNNFVSLNGIVYHPEGFLIVIHTFSGFLYKIDVTNGDVSSKVTVIDVSGGSLRFGDGLE 257
Query: 384 LLSPNKLVVAGSPSGRLVESADGWDTASVVATF-SGPKHRLATAS 253
LSP K+VVAGSPS +LVES+DGW TASV F SG HRL +++
Sbjct: 258 FLSPTKIVVAGSPSSKLVESSDGWRTASVTGWFSSGMVHRLVSSA 302
Score = 32.0 bits (71), Expect(3) = 6e-34
Identities = 12/17 (70%), Positives = 16/17 (93%)
Frame = -1
Query: 254 ATVKDGKVYLNHMLGMG 204
ATVK+G+VYLNH++G G
Sbjct: 302 ATVKEGRVYLNHIVGFG 318
Score = 21.6 bits (44), Expect(3) = 6e-34
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 196 KKKHAIVEAVF 164
KK+H +VEAVF
Sbjct: 320 KKRHILVEAVF 330
>ref|NP_182259.1| hypothetical protein; protein id: At2g47370.1 [Arabidopsis
thaliana] gi|25370645|pir||D84914 hypothetical protein
At2g47370 [imported] - Arabidopsis thaliana
gi|2275215|gb|AAB63837.1| hypothetical protein
[Arabidopsis thaliana]
Length = 330
Score = 132 bits (333), Expect(3) = 6e-34
Identities = 67/105 (63%), Positives = 79/105 (74%), Gaps = 4/105 (3%)
Frame = -3
Query: 555 WYKTFFGLNGIVYHPDGFLIVIHTFSGNLFKIDLAKGE---EVKIIKVEGGPLYFGDGLE 385
WY F LNGIVYHP+GFLIVIHTFSG L+KID+ G+ +V +I V GG L FGDGLE
Sbjct: 198 WYNNFVSLNGIVYHPEGFLIVIHTFSGFLYKIDVTNGDVSSKVTVIDVSGGSLRFGDGLE 257
Query: 384 LLSPNKLVVAGSPSGRLVESADGWDTASVVATF-SGPKHRLATAS 253
LSP K+VVAGSPS +LVES+DGW TASV F SG HRL +++
Sbjct: 258 FLSPTKIVVAGSPSSKLVESSDGWRTASVTGWFSSGMVHRLVSSA 302
Score = 32.0 bits (71), Expect(3) = 6e-34
Identities = 12/17 (70%), Positives = 16/17 (93%)
Frame = -1
Query: 254 ATVKDGKVYLNHMLGMG 204
ATVK+G+VYLNH++G G
Sbjct: 302 ATVKEGRVYLNHIVGFG 318
Score = 21.6 bits (44), Expect(3) = 6e-34
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 196 KKKHAIVEAVF 164
KK+H +VEAVF
Sbjct: 320 KKRHILVEAVF 330
>ref|NP_178250.1| hypothetical protein; protein id: At2g01410.1 [Arabidopsis
thaliana] gi|25410903|pir||D84424 hypothetical protein
At2g01410 [imported] - Arabidopsis thaliana
gi|3785971|gb|AAC67318.1| hypothetical protein
[Arabidopsis thaliana] gi|20197583|gb|AAM15141.1|
hypothetical protein [Arabidopsis thaliana]
Length = 387
Score = 39.7 bits (91), Expect = 0.026
Identities = 25/81 (30%), Positives = 39/81 (47%), Gaps = 1/81 (1%)
Frame = -3
Query: 537 GLNGIVYHPDGFLIVIHTFSGNLFKIDLAKGEEVKIIKVEGGPLYFGDGL-ELLSPNKLV 361
GLNGIVY G+L+V+ + +G +FK+D G ++ G L DG+ ++
Sbjct: 213 GLNGIVYISKGYLLVVQSNTGKVFKVDEDSGNARLVLL--NGDLIAADGMTRRRRDGTVM 270
Query: 360 VAGSPSGRLVESADGWDTASV 298
V L++S D W V
Sbjct: 271 VVSQKKLWLLKSQDSWSEGVV 291
>ref|NP_198218.1| putative protein; protein id: At5g28660.1 [Arabidopsis thaliana]
Length = 174
Score = 37.0 bits (84), Expect = 0.17
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -3
Query: 438 VKIIKVEGGPLYFGDGLELLSPNKLVVAGSPSGRLVE 328
V II V GG L FGDGLE LSP K+ + + G L E
Sbjct: 130 VTIIDVSGGNLRFGDGLEFLSPTKISKSKTQYGLLRE 166
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,569,929
Number of Sequences: 1393205
Number of extensions: 11232478
Number of successful extensions: 30545
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 29323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30513
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
