Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002895A_C01 KMC002895A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201373.1| NifS-like aminotranfserase; protein id: At5g657... 163 1e-39
ref|NP_445914.1| cysteine desulfurase [Rattus norvegicus] gi|201... 139 3e-32
ref|XP_192922.1| nitrogen fixation gene, yeast homolog 1 [Mus mu... 136 2e-31
gb|AAH10586.1| nitrogen fixation gene 1 (S. cerevisiae) [Mus mus... 136 2e-31
sp|Q9Z1J3|NFS1_MOUSE Cysteine desulfurase, mitochondrial precurs... 134 6e-31
>ref|NP_201373.1| NifS-like aminotranfserase; protein id: At5g65720.1, supported by
cDNA: gi_12656131, supported by cDNA: gi_15292880,
supported by cDNA: gi_20465270 [Arabidopsis thaliana]
gi|13431736|sp|O49543|NFS1_ARATH Cysteine desulfurase,
mitochondrial precursor gi|7447234|pir||T05896 probable
iron-sulfur cofactor synthesis protein F6H11.150 -
Arabidopsis thaliana gi|2827713|emb|CAA16686.1|
pyridoxal-phosphate-dependent aminotransferase - like
protein [Arabidopsis thaliana]
gi|6686815|emb|CAB64727.1| nifS-like protein
[Arabidopsis thaliana] gi|10177330|dbj|BAB10679.1|
NifS-like aminotranfserase [Arabidopsis thaliana]
gi|12656132|gb|AAK00758.1|AF229854_1 cysteine
desulfurase [Arabidopsis thaliana]
gi|15292881|gb|AAK92811.1| putative NifS
aminotranfserase [Arabidopsis thaliana]
gi|20465271|gb|AAM19999.1| putative NifS
aminotransferase [Arabidopsis thaliana]
Length = 453
Score = 163 bits (412), Expect = 1e-39
Identities = 80/92 (86%), Positives = 89/92 (95%)
Frame = -3
Query: 554 LLMGLKEIAVSSGSACTSASLEPSYVLRALGVEEDMAHTSISFGIGRFTTEAEIDRAIQL 375
LLMGLKE+AVSSGSACTSASLEPSYVLRALGV+EDMAHTSI FGIGRFTT+ EID+A++L
Sbjct: 362 LLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTKEEIDKAVEL 421
Query: 374 TVHQVEKLREMSPLYEMVKEGINIKDIQWAQH 279
TV QVEKLREMSPLYEMVKEGI+IK+IQW+QH
Sbjct: 422 TVKQVEKLREMSPLYEMVKEGIDIKNIQWSQH 453
>ref|NP_445914.1| cysteine desulfurase [Rattus norvegicus]
gi|20138811|sp|Q99P39|NFS1_RAT Cysteine desulfurase,
mitochondrial precursor gi|13095572|gb|AAK12337.1|
cysteine desulfurase [Rattus norvegicus]
Length = 451
Score = 139 bits (349), Expect = 3e-32
Identities = 63/92 (68%), Positives = 81/92 (87%)
Frame = -3
Query: 554 LLMGLKEIAVSSGSACTSASLEPSYVLRALGVEEDMAHTSISFGIGRFTTEAEIDRAIQL 375
LLM LK++A+SSGSACTSASLEPSYVLRA+G +ED+AH+SI FGIGRFTTE E+D +Q
Sbjct: 360 LLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVQK 419
Query: 374 TVHQVEKLREMSPLYEMVKEGINIKDIQWAQH 279
+H V++LREMSPL+EMV++GI++K I+W QH
Sbjct: 420 CIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 451
>ref|XP_192922.1| nitrogen fixation gene, yeast homolog 1 [Mus musculus]
gi|26344361|dbj|BAC35831.1| unnamed protein product [Mus
musculus]
Length = 459
Score = 136 bits (342), Expect = 2e-31
Identities = 62/92 (67%), Positives = 80/92 (86%)
Frame = -3
Query: 554 LLMGLKEIAVSSGSACTSASLEPSYVLRALGVEEDMAHTSISFGIGRFTTEAEIDRAIQL 375
LLM LK++A+SSGSACTSASLEPSYVLRA+G +ED+AH+SI FGIGRFTTE E+D +
Sbjct: 368 LLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTAEK 427
Query: 374 TVHQVEKLREMSPLYEMVKEGINIKDIQWAQH 279
+H V++LREMSPL+EMV++GI++K I+W QH
Sbjct: 428 CIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 459
>gb|AAH10586.1| nitrogen fixation gene 1 (S. cerevisiae) [Mus musculus]
Length = 459
Score = 136 bits (342), Expect = 2e-31
Identities = 62/92 (67%), Positives = 80/92 (86%)
Frame = -3
Query: 554 LLMGLKEIAVSSGSACTSASLEPSYVLRALGVEEDMAHTSISFGIGRFTTEAEIDRAIQL 375
LLM LK++A+SSGSACTSASLEPSYVLRA+G +ED+AH+SI FGIGRFTTE E+D +
Sbjct: 368 LLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTAEK 427
Query: 374 TVHQVEKLREMSPLYEMVKEGINIKDIQWAQH 279
+H V++LREMSPL+EMV++GI++K I+W QH
Sbjct: 428 CIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 459
>sp|Q9Z1J3|NFS1_MOUSE Cysteine desulfurase, mitochondrial precursor (m-Nfs1)
Length = 451
Score = 134 bits (338), Expect = 6e-31
Identities = 61/92 (66%), Positives = 79/92 (85%)
Frame = -3
Query: 554 LLMGLKEIAVSSGSACTSASLEPSYVLRALGVEEDMAHTSISFGIGRFTTEAEIDRAIQL 375
LLM LK++A+SSGSACTSASLEPSYV RA+G +ED+AH+SI FGIGRFTTE E+D +
Sbjct: 360 LLMALKDVALSSGSACTSASLEPSYVFRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTAEK 419
Query: 374 TVHQVEKLREMSPLYEMVKEGINIKDIQWAQH 279
+H V++LREMSPL+EMV++GI++K I+W QH
Sbjct: 420 CIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 451
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,859,910
Number of Sequences: 1393205
Number of extensions: 9314926
Number of successful extensions: 22868
Number of sequences better than 10.0: 250
Number of HSP's better than 10.0 without gapping: 22239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22847
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
