Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002891A_C01 KMC002891A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567017.1| glycosyl hydrolase family 20; protein id: At3g5... 42 0.006
pir||T47665 beta-N-acetylhexosaminidase-like protein - Arabidops... 42 0.006
>ref|NP_567017.1| glycosyl hydrolase family 20; protein id: At3g55260.1, supported by
cDNA: 118286. [Arabidopsis thaliana]
gi|21537026|gb|AAM61367.1|
beta-N-acetylhexosaminidase-like protein [Arabidopsis
thaliana] gi|24030299|gb|AAN41320.1| putative
beta-N-acetylhexosaminidase [Arabidopsis thaliana]
Length = 445
Score = 41.6 bits (96), Expect = 0.006
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -1
Query: 387 DMRKNFPFELFYLGGDEVNT 328
DMRK FPFELF+LGGDEVNT
Sbjct: 220 DMRKIFPFELFHLGGDEVNT 239
>pir||T47665 beta-N-acetylhexosaminidase-like protein - Arabidopsis thaliana
gi|7019659|emb|CAB75760.1|
beta-N-acetylhexosaminidase-like protein [Arabidopsis
thaliana]
Length = 557
Score = 41.6 bits (96), Expect = 0.006
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -1
Query: 387 DMRKNFPFELFYLGGDEVNT 328
DMRK FPFELF+LGGDEVNT
Sbjct: 332 DMRKIFPFELFHLGGDEVNT 351
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,299,264
Number of Sequences: 1393205
Number of extensions: 6925055
Number of successful extensions: 11845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11840
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
