Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002889A_C02 KMC002889A_c02
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171617.1| pyruvate dehydrogenase E1 alpha subunit; protei... 146 1e-34
gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana] 120 7e-27
ref|NP_486748.1| pyruvate dehydrogenase E1 component, alpha subu... 66 3e-10
gb|ZP_00110666.1| hypothetical protein [Nostoc punctiforme] 65 4e-10
ref|NP_345633.1| acetoin dehydrogenase, E1 component, alpha subu... 64 1e-09
>ref|NP_171617.1| pyruvate dehydrogenase E1 alpha subunit; protein id: At1g01090.1,
supported by cDNA: gi_15450706, supported by cDNA:
gi_17380621, supported by cDNA: gi_2454181 [Arabidopsis
thaliana] gi|2454182|gb|AAB86803.1| pyruvate
dehydrogenase E1 alpha subunit [Arabidopsis thaliana]
gi|15450707|gb|AAK96625.1| At1g01090/T25K16_8
[Arabidopsis thaliana] gi|17380622|gb|AAL36074.1|
At1g01090/T25K16_8 [Arabidopsis thaliana]
Length = 428
Score = 146 bits (368), Expect = 1e-34
Identities = 70/84 (83%), Positives = 75/84 (88%)
Frame = -2
Query: 499 RDPITALKKYIFENNLASEQELKAIEKKIDEVLEEAVEFADESPLPPRSQLLENVFADPK 320
RDPI ALKKY+ EN LA E ELK+IEKKIDE++EEAVEFAD SP P RSQLLENVFADPK
Sbjct: 345 RDPIAALKKYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPK 404
Query: 319 GFGIGPDGKYRCEDPKFTEGTAHV 248
GFGIGPDG+YRCEDPKFTEGTA V
Sbjct: 405 GFGIGPDGRYRCEDPKFTEGTAQV 428
>gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana]
Length = 679
Score = 120 bits (302), Expect = 7e-27
Identities = 58/73 (79%), Positives = 64/73 (87%)
Frame = -2
Query: 499 RDPITALKKYIFENNLASEQELKAIEKKIDEVLEEAVEFADESPLPPRSQLLENVFADPK 320
RDPI ALKKY+ EN LA E ELK+IEKKIDE++EEAVEFAD SP P RSQLLENVFADPK
Sbjct: 345 RDPIAALKKYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPK 404
Query: 319 GFGIGPDGKYRCE 281
GFGIGPDG+YR +
Sbjct: 405 GFGIGPDGRYRSQ 417
>ref|NP_486748.1| pyruvate dehydrogenase E1 component, alpha subunit [Nostoc sp. PCC
7120] gi|25284425|pir||AE2144 pyruvate dehydrogenase E1
component, alpha chain [imported] - Nostoc sp. (strain
PCC 7120) gi|17131801|dbj|BAB74407.1| pyruvate
dehydrogenase E1 component, alpha subunit [Nostoc sp.
PCC 7120]
Length = 344
Score = 65.9 bits (159), Expect = 3e-10
Identities = 32/58 (55%), Positives = 42/58 (72%)
Frame = -2
Query: 499 RDPITALKKYIFENNLASEQELKAIEKKIDEVLEEAVEFADESPLPPRSQLLENVFAD 326
RDPI L Y+ E NLA E ELKAIE+KI +V+++AV+FA+ SP P S+L VFA+
Sbjct: 285 RDPIKKLAAYLIEQNLADEAELKAIERKIQDVIDDAVKFAESSPEPDPSELYRFVFAE 342
>gb|ZP_00110666.1| hypothetical protein [Nostoc punctiforme]
Length = 344
Score = 65.1 bits (157), Expect = 4e-10
Identities = 31/58 (53%), Positives = 43/58 (73%)
Frame = -2
Query: 499 RDPITALKKYIFENNLASEQELKAIEKKIDEVLEEAVEFADESPLPPRSQLLENVFAD 326
RDPI L Y+ E NLA+E E+KAI++KI +V++EAV+FA+ SP P S+L VFA+
Sbjct: 285 RDPIKKLAAYLLEQNLANEGEIKAIDRKIQDVIDEAVKFAESSPEPDPSELYRFVFAE 342
>ref|NP_345633.1| acetoin dehydrogenase, E1 component, alpha subunit, putative
[Streptococcus pneumoniae TIGR4] gi|25284409|pir||H95134
hypothetical protein SP1164 [imported] - Streptococcus
pneumoniae (strain TIGR4) gi|14972643|gb|AAK75273.1|
acetoin dehydrogenase, E1 component, alpha subunit,
putative [Streptococcus pneumoniae TIGR4]
Length = 322
Score = 63.5 bits (153), Expect = 1e-09
Identities = 26/58 (44%), Positives = 42/58 (71%)
Frame = -2
Query: 499 RDPITALKKYIFENNLASEQELKAIEKKIDEVLEEAVEFADESPLPPRSQLLENVFAD 326
+DPI L+ Y+ ENN+AS +EL+ I+ ++ E +E +V+FA+ESP PP E+++AD
Sbjct: 265 KDPIENLRNYLIENNIASAEELEEIQAQVKEAVEASVKFAEESPFPPLESAFEDIYAD 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,090,097
Number of Sequences: 1393205
Number of extensions: 9491149
Number of successful extensions: 34612
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 33468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34589
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
