Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002888A_C01 KMC002888A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201549.1| putative protein; protein id: At5g67480.1, supp... 99 4e-20
pir||T04718 hypothetical protein F19F18.100 - Arabidopsis thalia... 90 2e-17
gb|AAM61515.1| unknown [Arabidopsis thaliana] 90 2e-17
ref|NP_568031.1| putative protein; protein id: At4g37610.1, supp... 90 2e-17
dbj|BAC43651.1| unknown protein [Arabidopsis thaliana] 90 2e-17
>ref|NP_201549.1| putative protein; protein id: At5g67480.1, supported by cDNA:
gi_15529177, supported by cDNA: gi_17386119 [Arabidopsis
thaliana] gi|9757869|dbj|BAB08456.1|
gene_id:K9I9.4~pir||T04718~strong similarity to unknown
protein [Arabidopsis thaliana]
gi|15529178|gb|AAK97683.1| AT5g67480/K9I9_4 [Arabidopsis
thaliana] gi|17386120|gb|AAL38606.1|AF446873_1
AT5g67480/K9I9_4 [Arabidopsis thaliana]
Length = 372
Score = 99.0 bits (245), Expect = 4e-20
Identities = 41/69 (59%), Positives = 55/69 (79%)
Frame = -2
Query: 556 RVPGACVHCQRMWLLLELHSRLCADPDFCRVPLCRNFKQRVSIPSQKEEIRWKILIEKIL 377
RVPG CVHC+RMW LLELHSR+CA D CRVPLCRN K+++ S+K+E RWK+L++ +L
Sbjct: 296 RVPGGCVHCKRMWQLLELHSRVCAGSDQCRVPLCRNLKEKMEKQSKKDESRWKLLVKNVL 355
Query: 376 STRAIGIAP 350
++ IG +P
Sbjct: 356 GSKKIGGSP 364
>pir||T04718 hypothetical protein F19F18.100 - Arabidopsis thaliana
gi|4468986|emb|CAB38300.1| putative protein [Arabidopsis
thaliana] gi|7270743|emb|CAB80426.1| putative protein
[Arabidopsis thaliana]
Length = 365
Score = 90.1 bits (222), Expect = 2e-17
Identities = 36/68 (52%), Positives = 51/68 (74%)
Frame = -2
Query: 553 VPGACVHCQRMWLLLELHSRLCADPDFCRVPLCRNFKQRVSIPSQKEEIRWKILIEKILS 374
+PG C C+RMW LLELHSR+C D + C+VPLC + K+R+ S+K+E RWK+L+ +LS
Sbjct: 288 IPGGCSRCKRMWQLLELHSRICVDSEQCKVPLCSSLKERMKTQSRKDEKRWKLLVRNVLS 347
Query: 373 TRAIGIAP 350
T+ IG +P
Sbjct: 348 TKRIGGSP 355
>gb|AAM61515.1| unknown [Arabidopsis thaliana]
Length = 367
Score = 90.1 bits (222), Expect = 2e-17
Identities = 36/68 (52%), Positives = 51/68 (74%)
Frame = -2
Query: 553 VPGACVHCQRMWLLLELHSRLCADPDFCRVPLCRNFKQRVSIPSQKEEIRWKILIEKILS 374
+PG C C+RMW LLELHSR+C D + C+VPLC + K+R+ S+K+E RWK+L+ +LS
Sbjct: 290 IPGGCSRCKRMWQLLELHSRICVDSEQCKVPLCSSLKERMKTQSRKDEKRWKLLVRNVLS 349
Query: 373 TRAIGIAP 350
T+ IG +P
Sbjct: 350 TKRIGGSP 357
>ref|NP_568031.1| putative protein; protein id: At4g37610.1, supported by cDNA:
122670. [Arabidopsis thaliana]
Length = 368
Score = 90.1 bits (222), Expect = 2e-17
Identities = 36/68 (52%), Positives = 51/68 (74%)
Frame = -2
Query: 553 VPGACVHCQRMWLLLELHSRLCADPDFCRVPLCRNFKQRVSIPSQKEEIRWKILIEKILS 374
+PG C C+RMW LLELHSR+C D + C+VPLC + K+R+ S+K+E RWK+L+ +LS
Sbjct: 291 IPGGCSRCKRMWQLLELHSRICVDSEQCKVPLCSSLKERMKTQSRKDEKRWKLLVRNVLS 350
Query: 373 TRAIGIAP 350
T+ IG +P
Sbjct: 351 TKRIGGSP 358
>dbj|BAC43651.1| unknown protein [Arabidopsis thaliana]
Length = 368
Score = 90.1 bits (222), Expect = 2e-17
Identities = 36/68 (52%), Positives = 51/68 (74%)
Frame = -2
Query: 553 VPGACVHCQRMWLLLELHSRLCADPDFCRVPLCRNFKQRVSIPSQKEEIRWKILIEKILS 374
+PG C C+RMW LLELHSR+C D + C+VPLC + K+R+ S+K+E RWK+L+ +LS
Sbjct: 291 IPGGCSRCKRMWQLLELHSRICVDSEQCKVPLCSSLKERMKTQSRKDEKRWKLLVRNVLS 350
Query: 373 TRAIGIAP 350
T+ IG +P
Sbjct: 351 TKRIGGSP 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,403,025
Number of Sequences: 1393205
Number of extensions: 9316431
Number of successful extensions: 18401
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 18007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18396
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
