Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002878A_C02 KMC002878A_c02
(853 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565409.1| expressed protein; protein id: At2g17230.1, sup... 275 1e-74
gb|AAM65928.1| unknown [Arabidopsis thaliana] 272 9e-74
dbj|BAB19386.1| contains ESTs C27834(C53187),AU161017(C53187)~un... 238 9e-64
ref|NP_199968.1| putative protein; protein id: At5g51550.1, supp... 222 2e-58
gb|AAL24269.1| AT5g51550/K17N15_10 [Arabidopsis thaliana] gi|216... 222 2e-58
>ref|NP_565409.1| expressed protein; protein id: At2g17230.1, supported by cDNA:
641., supported by cDNA: gi_16604329, supported by cDNA:
gi_19699195 [Arabidopsis thaliana]
gi|25371899|pir||F84549 hypothetical protein At2g17230
[imported] - Arabidopsis thaliana
gi|4584346|gb|AAD25141.1| expressed protein [Arabidopsis
thaliana] gi|16604330|gb|AAL24171.1| At2g17230/T23A1.9
[Arabidopsis thaliana] gi|19699196|gb|AAL90964.1|
At2g17230/T23A1.9 [Arabidopsis thaliana]
Length = 363
Score = 275 bits (703), Expect(2) = 1e-74
Identities = 122/152 (80%), Positives = 137/152 (89%)
Frame = -1
Query: 853 LVLTSEDVTMDEYCRAVCGFHYFTFPSKVGYTLPYAWVGNSGKQCAEVCAYPFAVPEYMA 674
LVLTS DVTM ++CRAVCGFHYFTFPS VGYT+PYAWVG SGKQC EVCAYPFA+P YM
Sbjct: 194 LVLTSHDVTMQDFCRAVCGFHYFTFPSMVGYTMPYAWVGQSGKQCPEVCAYPFALPGYMG 253
Query: 673 GGGPGKLAPPNGDVGVDGMVSVIAHELAELSSNPLVNAWYAGEDPTAPTEIGDLCEGLYG 494
GGPG+L PPNG+ GVDGMVSVI HELAE+ SNPL+NAWYAGEDPTAPTEIGDLCEGLYG
Sbjct: 254 HGGPGELRPPNGETGVDGMVSVIGHELAEVVSNPLINAWYAGEDPTAPTEIGDLCEGLYG 313
Query: 493 TGGGGGYIGEVMKDKGGRTFNLNGLGNRRFLV 398
+GGGGGYIG+VM+D+ G+TFN+NG G R+FLV
Sbjct: 314 SGGGGGYIGQVMRDREGKTFNMNGKGGRKFLV 345
Score = 27.7 bits (60), Expect(2) = 1e-74
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 389 LWSPVLNACAGPNASD 342
+W+P L AC+GPN+ D
Sbjct: 348 IWNPNLKACSGPNSVD 363
>gb|AAM65928.1| unknown [Arabidopsis thaliana]
Length = 365
Score = 272 bits (696), Expect(2) = 9e-74
Identities = 121/152 (79%), Positives = 136/152 (88%)
Frame = -1
Query: 853 LVLTSEDVTMDEYCRAVCGFHYFTFPSKVGYTLPYAWVGNSGKQCAEVCAYPFAVPEYMA 674
LVLTS DVTM ++CRAVCGFHYFT PS VGYT+PYAWVG SGKQC EVCAYPFA+P YM
Sbjct: 196 LVLTSHDVTMQDFCRAVCGFHYFTXPSMVGYTMPYAWVGQSGKQCPEVCAYPFALPGYMG 255
Query: 673 GGGPGKLAPPNGDVGVDGMVSVIAHELAELSSNPLVNAWYAGEDPTAPTEIGDLCEGLYG 494
GGPG+L PPNG+ GVDGMVSVI HELAE+ SNPL+NAWYAGEDPTAPTEIGDLCEGLYG
Sbjct: 256 HGGPGELRPPNGETGVDGMVSVIGHELAEVVSNPLINAWYAGEDPTAPTEIGDLCEGLYG 315
Query: 493 TGGGGGYIGEVMKDKGGRTFNLNGLGNRRFLV 398
+GGGGGYIG+VM+D+ G+TFN+NG G R+FLV
Sbjct: 316 SGGGGGYIGQVMRDREGKTFNMNGKGGRKFLV 347
Score = 27.7 bits (60), Expect(2) = 9e-74
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 389 LWSPVLNACAGPNASD 342
+W+P L AC+GPN+ D
Sbjct: 350 IWNPNLKACSGPNSVD 365
>dbj|BAB19386.1| contains ESTs C27834(C53187),AU161017(C53187)~unknown protein
[Oryza sativa (japonica cultivar-group)]
gi|28190675|gb|AAO33153.1| unknown [Oryza sativa
(japonica cultivar-group)]
Length = 348
Score = 238 bits (606), Expect(2) = 9e-64
Identities = 109/153 (71%), Positives = 128/153 (83%), Gaps = 1/153 (0%)
Frame = -1
Query: 853 LVLTSEDVTMDEYCRAVCGFHYFTFPSKVGYTLPYAWVGNSGKQCAEVCAYPFAVPEYMA 674
LVLTS +V ++ +C VCGFHYFTFPS VGYTLPYAWVGNS +C EVCAYPFA+P Y+
Sbjct: 178 LVLTSPEVVVENFCGQVCGFHYFTFPSVVGYTLPYAWVGNSAARCPEVCAYPFAIPSYV- 236
Query: 673 GGGPGKLAPPNGDVGVDGMVSVIAHELAELSSNPLVNAWYAGEDPTAPTEIGDLCEGLYG 494
GGG APPNGDVGVDGMVSVIAHELAEL+SNPL NAWYAGEDP+ PTEI DLCEG+YG
Sbjct: 237 GGGRRAEAPPNGDVGVDGMVSVIAHELAELASNPLANAWYAGEDPSFPTEIADLCEGIYG 296
Query: 493 TGGGGGYIGEVMKD-KGGRTFNLNGLGNRRFLV 398
TGGGG Y G+++ D + G ++N+NG+G R+FLV
Sbjct: 297 TGGGGAYTGQLLTDGRSGASYNVNGVGGRKFLV 329
Score = 28.9 bits (63), Expect(2) = 9e-64
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 389 LWSPVLNACAGPNASD 342
+W+P+L+ C+GPNA D
Sbjct: 332 VWNPILSYCSGPNALD 347
>ref|NP_199968.1| putative protein; protein id: At5g51550.1, supported by cDNA:
33455., supported by cDNA: gi_16226761, supported by
cDNA: gi_16604526 [Arabidopsis thaliana]
gi|9758197|dbj|BAB08671.1|
gb|AAD25141.1~gene_id:K17N15.10~similar to unknown
protein [Arabidopsis thaliana]
gi|16226762|gb|AAL16255.1|AF428325_1 AT5g51550/K17N15_10
[Arabidopsis thaliana]
Length = 337
Score = 222 bits (565), Expect(2) = 2e-58
Identities = 101/152 (66%), Positives = 123/152 (80%)
Frame = -1
Query: 853 LVLTSEDVTMDEYCRAVCGFHYFTFPSKVGYTLPYAWVGNSGKQCAEVCAYPFAVPEYMA 674
L+LT++DV + ++C VCGFHYFTFPS VG+TLPYAWVGNS K C VCAYPFAVP ++
Sbjct: 171 LLLTADDVYVQDFCGQVCGFHYFTFPSIVGFTLPYAWVGNSAKLCPGVCAYPFAVPAFIP 230
Query: 673 GGGPGKLAPPNGDVGVDGMVSVIAHELAELSSNPLVNAWYAGEDPTAPTEIGDLCEGLYG 494
G P K PNGDVGVDGM+SVIAHE+AEL++NPLVNAWYAG DP AP EI DLCEG+YG
Sbjct: 231 GLKPVK--SPNGDVGVDGMISVIAHEIAELATNPLVNAWYAGPDPVAPVEIADLCEGIYG 288
Query: 493 TGGGGGYIGEVMKDKGGRTFNLNGLGNRRFLV 398
TGGGG Y G+++ D G T+N+NG+ RR+L+
Sbjct: 289 TGGGGSYTGQMLNDHSGATYNVNGI-RRRYLI 319
Score = 26.6 bits (57), Expect(2) = 2e-58
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = -3
Query: 389 LWSPVLNACAGPNASD 342
LWS V++ C GPNA D
Sbjct: 322 LWSHVVSYCTGPNALD 337
>gb|AAL24269.1| AT5g51550/K17N15_10 [Arabidopsis thaliana]
gi|21655293|gb|AAM65358.1| AT5g51550/K17N15_10
[Arabidopsis thaliana]
Length = 337
Score = 222 bits (565), Expect(2) = 2e-58
Identities = 101/152 (66%), Positives = 123/152 (80%)
Frame = -1
Query: 853 LVLTSEDVTMDEYCRAVCGFHYFTFPSKVGYTLPYAWVGNSGKQCAEVCAYPFAVPEYMA 674
L+LT++DV + ++C VCGFHYFTFPS VG+TLPYAWVGNS K C VCAYPFAVP ++
Sbjct: 171 LLLTADDVYVQDFCGQVCGFHYFTFPSIVGFTLPYAWVGNSAKLCPGVCAYPFAVPAFIP 230
Query: 673 GGGPGKLAPPNGDVGVDGMVSVIAHELAELSSNPLVNAWYAGEDPTAPTEIGDLCEGLYG 494
G P K PNGDVGVDGM+SVIAHE+AEL++NPLVNAWYAG DP AP EI DLCEG+YG
Sbjct: 231 GLKPVK--SPNGDVGVDGMISVIAHEIAELATNPLVNAWYAGPDPVAPVEIADLCEGIYG 288
Query: 493 TGGGGGYIGEVMKDKGGRTFNLNGLGNRRFLV 398
TGGGG Y G+++ D G T+N+NG+ RR+L+
Sbjct: 289 TGGGGSYTGQMLNDHSGATYNVNGI-RRRYLI 319
Score = 26.6 bits (57), Expect(2) = 2e-58
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = -3
Query: 389 LWSPVLNACAGPNASD 342
LWS V++ C GPNA D
Sbjct: 322 LWSHVVSYCTGPNALD 337
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 835,529,300
Number of Sequences: 1393205
Number of extensions: 22699647
Number of successful extensions: 176242
Number of sequences better than 10.0: 1889
Number of HSP's better than 10.0 without gapping: 116249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156773
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44873636157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
