Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002867A_C02 KMC002867A_c02
(887 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZRB0|TBB3_WHEAT Tubulin beta-3 chain (Beta-3 tubulin) gi|40... 44 0.003
sp|Q9ZPN8|TBB3_ELEIN Tubulin beta-3 chain (Beta-3 tubulin) gi|44... 42 0.012
sp|Q9ZSW1|TBB1_CYAPA Tubulin beta-1 chain (Beta-1 tubulin) gi|41... 42 0.016
gb|AAK27411.1| beta-tubulin [Monosiga brevicollis] 41 0.021
gb|AAM02970.1|AF421537_1 beta-tubulin [Crypthecodinium cohnii] 41 0.028
>sp|Q9ZRB0|TBB3_WHEAT Tubulin beta-3 chain (Beta-3 tubulin) gi|4098323|gb|AAD10489.1|
beta-tubulin 3 [Triticum aestivum]
Length = 445
Score = 43.9 bits (102), Expect = 0.003
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = -2
Query: 886 AEYQQYQDATAVEEEEGDEEEEE 818
AEYQQYQDATA EEEE DEEEEE
Sbjct: 420 AEYQQYQDATADEEEEYDEEEEE 442
>sp|Q9ZPN8|TBB3_ELEIN Tubulin beta-3 chain (Beta-3 tubulin) gi|4415994|gb|AAD20180.1|
beta-tubulin 3 [Eleusine indica]
Length = 446
Score = 42.0 bits (97), Expect = 0.012
Identities = 19/23 (82%), Positives = 21/23 (90%)
Frame = -2
Query: 886 AEYQQYQDATAVEEEEGDEEEEE 818
AEYQQYQDATA EEEE D++EEE
Sbjct: 420 AEYQQYQDATAEEEEEYDDDEEE 442
>sp|Q9ZSW1|TBB1_CYAPA Tubulin beta-1 chain (Beta-1 tubulin) gi|4139172|gb|AAD03712.1|
beta 1 tubulin [Cyanophora paradoxa]
Length = 447
Score = 41.6 bits (96), Expect = 0.016
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -2
Query: 886 AEYQQYQDATAVEEEEGDEEEEE 818
+EYQQYQDATA EE EGDEEE E
Sbjct: 420 SEYQQYQDATAEEEGEGDEEEAE 442
>gb|AAK27411.1| beta-tubulin [Monosiga brevicollis]
Length = 444
Score = 41.2 bits (95), Expect = 0.021
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = -2
Query: 886 AEYQQYQDATAVEEEEGDEEEEEFD 812
+EYQQYQDATA EE E DEEEEE +
Sbjct: 420 SEYQQYQDATAEEEGEFDEEEEEME 444
>gb|AAM02970.1|AF421537_1 beta-tubulin [Crypthecodinium cohnii]
Length = 445
Score = 40.8 bits (94), Expect = 0.028
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = -2
Query: 886 AEYQQYQDATAVEEEEGDEEEEEFD 812
+EYQQYQDATA EE E DEEE E+D
Sbjct: 420 SEYQQYQDATADEEGEFDEEEGEYD 444
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 751,685,354
Number of Sequences: 1393205
Number of extensions: 16680870
Number of successful extensions: 92099
Number of sequences better than 10.0: 290
Number of HSP's better than 10.0 without gapping: 60032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79355
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 48218255001
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
