Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002860A_C02 KMC002860A_c02
(678 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC82185.1| ornithine aminotransferase [Medicago truncatula] 203 2e-51
gb|AAG09278.1|AF177590_1 ornithine aminotransferase [Vitis vinif... 166 2e-40
ref|NP_199430.1| ornithine aminotransferase; protein id: At5g461... 158 6e-38
ref|NP_644974.1| ornithine aminotransferase [Staphylococcus aure... 87 2e-16
ref|NP_370709.1| ornithine aminotransferase [Staphylococcus aure... 87 2e-16
>emb|CAC82185.1| ornithine aminotransferase [Medicago truncatula]
Length = 469
Score = 203 bits (516), Expect = 2e-51
Identities = 104/140 (74%), Positives = 119/140 (84%)
Frame = -2
Query: 677 ASLDVIKEERLVERSAQMGEELLNQLRKIQQKFPDHVKEVRGKGLFIGLELNSKSLFPVS 498
ASL+VIKEERL ERS ++G ELL L KIQ+++PDHVKEVRG+GLFIG+ELNS+SL PVS
Sbjct: 330 ASLEVIKEERLAERSTKLGGELLGLLEKIQKQYPDHVKEVRGRGLFIGVELNSESLSPVS 389
Query: 497 GFELSEKLKDRGVLAKPTHDTIIRFTPPLCISRDEILEASKALSDVLETDLPKLAEDEAQ 318
FELSEKLKDRGVLAK THDTIIRFTPPLCIS DEI + SKAL+DVLE DLP L + + +
Sbjct: 390 FFELSEKLKDRGVLAKSTHDTIIRFTPPLCISADEIQQGSKALADVLEIDLPMLKKMKPK 449
Query: 317 ATAAPPAAPEACDRCGRVLY 258
AAPPA P ACDRCGRV+Y
Sbjct: 450 -DAAPPAGPSACDRCGRVVY 468
>gb|AAG09278.1|AF177590_1 ornithine aminotransferase [Vitis vinifera]
Length = 466
Score = 166 bits (421), Expect = 2e-40
Identities = 87/137 (63%), Positives = 102/137 (73%)
Frame = -2
Query: 677 ASLDVIKEERLVERSAQMGEELLNQLRKIQQKFPDHVKEVRGKGLFIGLELNSKSLFPVS 498
ASLDVI EE L ERS QMG+EL NQL KI Q FP+ +KEVRGKGLF +ELNSK+LFPVS
Sbjct: 327 ASLDVITEEGLSERSDQMGQELRNQLMKIHQLFPNLIKEVRGKGLFNAVELNSKALFPVS 386
Query: 497 GFELSEKLKDRGVLAKPTHDTIIRFTPPLCISRDEILEASKALSDVLETDLPKLAEDEAQ 318
+++ KLK+RGVLAKPTHDTIIR TPPL IS DE+ E S AL DV+E D+PK+ +A+
Sbjct: 387 AYDICLKLKERGVLAKPTHDTIIRLTPPLSISLDELQEGSNALRDVMEFDVPKM--QKAK 444
Query: 317 ATAAPPAAPEACDRCGR 267
P CDRCGR
Sbjct: 445 HKRVPQTTTNICDRCGR 461
>ref|NP_199430.1| ornithine aminotransferase; protein id: At5g46180.1 [Arabidopsis
thaliana] gi|9757738|dbj|BAB08263.1| ornithine
aminotransferase [Arabidopsis thaliana]
Length = 475
Score = 158 bits (400), Expect = 6e-38
Identities = 82/141 (58%), Positives = 106/141 (75%)
Frame = -2
Query: 677 ASLDVIKEERLVERSAQMGEELLNQLRKIQQKFPDHVKEVRGKGLFIGLELNSKSLFPVS 498
ASLDVI EE+LVERSA +GEEL QL +I+++FP ++KEVRG+GLF +E NS+SL PVS
Sbjct: 337 ASLDVIVEEKLVERSASLGEELRIQLNEIKKQFPKYIKEVRGRGLFNAIEFNSESLSPVS 396
Query: 497 GFELSEKLKDRGVLAKPTHDTIIRFTPPLCISRDEILEASKALSDVLETDLPKLAEDEAQ 318
+++ LK+RGVLAKPTH+TI+R TPPL IS DE+ + S+AL DVLE DLP L + +
Sbjct: 397 AYDICLSLKERGVLAKPTHNTIVRLTPPLSISSDELRDGSEALHDVLELDLPNLLKINSG 456
Query: 317 ATAAPPAAPEACDRCGRVLYS 255
T P + CDRCGR LY+
Sbjct: 457 KT--PVSHITECDRCGRNLYA 475
>ref|NP_644974.1| ornithine aminotransferase [Staphylococcus aureus subsp. aureus
MW2] gi|28376901|sp|Q8NYM5|ARGD_STAAW Acetylornithine
aminotransferase (ACOAT) gi|21203323|dbj|BAB94024.1|
ornithine aminotransferase [Staphylococcus aureus subsp.
aureus MW2]
Length = 394
Score = 87.4 bits (215), Expect = 2e-16
Identities = 50/108 (46%), Positives = 71/108 (65%)
Frame = -2
Query: 677 ASLDVIKEERLVERSAQMGEELLNQLRKIQQKFPDHVKEVRGKGLFIGLELNSKSLFPVS 498
A+LDV+K+E+LVERS ++G LL L +Q K P +KE+RG+GLFIG+ELN+ +
Sbjct: 295 AALDVLKDEQLVERSERLGSFLLKAL--LQLKHPS-IKEIRGRGLFIGIELNTDAA---- 347
Query: 497 GFELSEKLKDRGVLAKPTHDTIIRFTPPLCISRDEILEASKALSDVLE 354
++L RG+L K TH TIIR +PPL I ++EI + A DV +
Sbjct: 348 --PFVDQLIQRGILCKDTHRTIIRLSPPLVIDKEEIHQIVAAFQDVFK 393
>ref|NP_370709.1| ornithine aminotransferase [Staphylococcus aureus subsp. aureus
Mu50] gi|15925889|ref|NP_373422.1| ornithine
aminotransferase [Staphylococcus aureus subsp. aureus
N315] gi|28376933|sp|Q99X36|ARGD_STAAM Acetylornithine
aminotransferase (ACOAT) gi|25287254|pir||E89780
ornithine aminotransferase [imported] - Staphylococcus
aureus (strain N315) gi|13700101|dbj|BAB41400.1|
ornithine aminotransferase [Staphylococcus aureus subsp.
aureus N315] gi|14245952|dbj|BAB56347.1| ornithine
aminotransferase [Staphylococcus aureus subsp. aureus
Mu50]
Length = 394
Score = 87.4 bits (215), Expect = 2e-16
Identities = 50/108 (46%), Positives = 71/108 (65%)
Frame = -2
Query: 677 ASLDVIKEERLVERSAQMGEELLNQLRKIQQKFPDHVKEVRGKGLFIGLELNSKSLFPVS 498
A+LDV+K+E+LVERS ++G LL L +Q K P +KE+RG+GLFIG+ELN+ +
Sbjct: 295 AALDVLKDEQLVERSERLGSFLLKAL--LQLKHPS-IKEIRGRGLFIGIELNTDAA---- 347
Query: 497 GFELSEKLKDRGVLAKPTHDTIIRFTPPLCISRDEILEASKALSDVLE 354
++L RG+L K TH TIIR +PPL I ++EI + A DV +
Sbjct: 348 --PFVDQLIQRGILCKDTHRTIIRLSPPLVIDKEEIHQIVAAFQDVFK 393
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,184,748
Number of Sequences: 1393205
Number of extensions: 11745703
Number of successful extensions: 41802
Number of sequences better than 10.0: 470
Number of HSP's better than 10.0 without gapping: 37823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41080
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
