Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002859A_C01 KMC002859A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD38153.1| putative phosphatidylcholine-sterol acetyltransf... 80 2e-14
emb|CAD38155.1| putative acetyltransferase [Physcomitrella patens] 79 5e-14
ref|NP_196868.1| putative protein; protein id: At5g13640.1, supp... 76 3e-13
ref|NP_190069.1| putative protein; protein id: At3g44830.1 [Arab... 75 6e-13
emb|CAD60714.1| unnamed protein product [Podospora anserina] 33 1.9
>emb|CAD38153.1| putative phosphatidylcholine-sterol acetyltransferase
[Physcomitrella patens]
Length = 502
Score = 79.7 bits (195), Expect = 2e-14
Identities = 34/49 (69%), Positives = 45/49 (91%)
Frame = -3
Query: 568 SGAHVDIMGNFALIEDVIRIAAGAKGEDLGGDRVYSDIFKWSEKIKLPL 422
SGAHVDIMGNFALIED++++AAG GED+GG+R++SD+ +WSE+IKL L
Sbjct: 454 SGAHVDIMGNFALIEDILKVAAGMTGEDIGGNRIFSDLREWSERIKLKL 502
>emb|CAD38155.1| putative acetyltransferase [Physcomitrella patens]
Length = 469
Score = 78.6 bits (192), Expect = 5e-14
Identities = 34/49 (69%), Positives = 44/49 (89%)
Frame = -3
Query: 568 SGAHVDIMGNFALIEDVIRIAAGAKGEDLGGDRVYSDIFKWSEKIKLPL 422
SGAHVDIMGNFALIED++++AAG GED+GG+R++SD+ WSE+IKL L
Sbjct: 421 SGAHVDIMGNFALIEDILKVAAGMTGEDIGGNRIFSDLRVWSERIKLKL 469
>ref|NP_196868.1| putative protein; protein id: At5g13640.1, supported by cDNA:
gi_15450694 [Arabidopsis thaliana]
gi|9758029|dbj|BAB08690.1| contains similarity to
unknown protein~gene_id:MSH12.10~ref|NP_014405.1
[Arabidopsis thaliana] gi|15450695|gb|AAK96619.1|
AT5g13640/MSH12_10 [Arabidopsis thaliana]
Length = 671
Score = 75.9 bits (185), Expect = 3e-13
Identities = 34/49 (69%), Positives = 42/49 (85%)
Frame = -3
Query: 568 SGAHVDIMGNFALIEDVIRIAAGAKGEDLGGDRVYSDIFKWSEKIKLPL 422
SGAHVDIMGNFALIED++R+AAG G D+G D+V+S IF+WSE+I L L
Sbjct: 623 SGAHVDIMGNFALIEDIMRVAAGGNGSDIGHDQVHSGIFEWSERIDLKL 671
>ref|NP_190069.1| putative protein; protein id: At3g44830.1 [Arabidopsis thaliana]
gi|11357700|pir||T51780 hypothetical protein F28D10_20 -
Arabidopsis thaliana gi|9798386|emb|CAC03533.1| putative
protein [Arabidopsis thaliana]
Length = 665
Score = 75.1 bits (183), Expect = 6e-13
Identities = 33/49 (67%), Positives = 42/49 (85%)
Frame = -3
Query: 568 SGAHVDIMGNFALIEDVIRIAAGAKGEDLGGDRVYSDIFKWSEKIKLPL 422
SGAHVDIMGN LIEDV+RIAAGA G+++GGDR+YSD+ + SE+I + L
Sbjct: 617 SGAHVDIMGNVGLIEDVLRIAAGASGQEIGGDRIYSDVMRMSERISIKL 665
>emb|CAD60714.1| unnamed protein product [Podospora anserina]
Length = 627
Score = 33.5 bits (75), Expect = 1.9
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = -3
Query: 559 HVDIMGNFALIEDVIRIAAGAKGEDLGGDRVYSDIFKWSEKIKL 428
HVDI+G L E ++RIAAG GE D V S I +++E+ K+
Sbjct: 582 HVDILGRSNLNELILRIAAGRGGEI--QDYVVSSIREYAERAKI 623
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,723,027
Number of Sequences: 1393205
Number of extensions: 9192587
Number of successful extensions: 19039
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19030
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
