Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002853A_C01 KMC002853A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196966.1| putative protein; protein id: At5g14620.1 [Arab... 170 1e-41
gb|AAF66129.1|AF240695_1 cytosine methyltransferase [Arabidopsis... 170 1e-41
gb|AAN61474.1| Putative DNA cytosine methyltransferase Zmet3 [Or... 167 7e-41
gb|AAF68437.1| putative DNA cytosine methyltransferase Zmet3 [Ze... 166 2e-40
ref|NP_197042.1| putative protein; protein id: At5g15380.1 [Arab... 164 1e-39
>ref|NP_196966.1| putative protein; protein id: At5g14620.1 [Arabidopsis thaliana]
gi|11281152|pir||T48635 hypothetical protein T15N1.110 -
Arabidopsis thaliana gi|7573311|emb|CAB87629.1| putative
protein [Arabidopsis thaliana]
Length = 413
Score = 170 bits (430), Expect = 1e-41
Identities = 84/120 (70%), Positives = 99/120 (82%)
Frame = -1
Query: 585 GMNVLSLFSGIGGAEVALHRLGIPLKNVVSVEKSEVNRNIVRSWWEQTNQKGNLIDLDDV 406
G+NVLSLF+GIGG EVALHRL I +K VVSVE S+VNRNI++ +WEQTNQ G LI+ D+
Sbjct: 288 GINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISKVNRNILKDFWEQTNQTGELIEFSDI 347
Query: 405 QLLDADRLEQLMSATGGFDLVIGGSPCNNLAGSNRVSRDGLEGKESSLFFDYCRILDLVK 226
Q L D +E LM GGFDLVIGGSPCNNLAG NRVSR GLEG +SSLFF+YCRIL++V+
Sbjct: 348 QHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNRVSRVGLEGDQSSLFFEYCRILEVVR 407
>gb|AAF66129.1|AF240695_1 cytosine methyltransferase [Arabidopsis thaliana]
Length = 626
Score = 170 bits (430), Expect = 1e-41
Identities = 84/120 (70%), Positives = 99/120 (82%)
Frame = -1
Query: 585 GMNVLSLFSGIGGAEVALHRLGIPLKNVVSVEKSEVNRNIVRSWWEQTNQKGNLIDLDDV 406
G+NVLSLF+GIGG EVALHRL I +K VVSVE S+VNRNI++ +WEQTNQ G LI+ D+
Sbjct: 501 GINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISKVNRNILKDFWEQTNQTGELIEFSDI 560
Query: 405 QLLDADRLEQLMSATGGFDLVIGGSPCNNLAGSNRVSRDGLEGKESSLFFDYCRILDLVK 226
Q L D +E LM GGFDLVIGGSPCNNLAG NRVSR GLEG +SSLFF+YCRIL++V+
Sbjct: 561 QHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNRVSRVGLEGDQSSLFFEYCRILEVVR 620
>gb|AAN61474.1| Putative DNA cytosine methyltransferase Zmet3 [Oryza sativa (japonica
cultivar-group)]
Length = 881
Score = 167 bits (424), Expect = 7e-41
Identities = 83/117 (70%), Positives = 98/117 (82%)
Frame = -1
Query: 585 GMNVLSLFSGIGGAEVALHRLGIPLKNVVSVEKSEVNRNIVRSWWEQTNQKGNLIDLDDV 406
GMNVLSLFSGIGGAEVALHRLGI +K V+SVEKSEVNR I++SWW+QT Q G LI++ DV
Sbjct: 679 GMNVLSLFSGIGGAEVALHRLGIHMKTVISVEKSEVNRTILKSWWDQT-QTGTLIEIADV 737
Query: 405 QLLDADRLEQLMSATGGFDLVIGGSPCNNLAGSNRVSRDGLEGKESSLFFDYCRILD 235
+ L +R+E + GGFDLVIGGSPCNNLAGSNR RDGLEG+ S+LF+DY RIL+
Sbjct: 738 RHLTTERIETFIRRFGGFDLVIGGSPCNNLAGSNRHHRDGLEGEHSALFYDYIRILE 794
>gb|AAF68437.1| putative DNA cytosine methyltransferase Zmet3 [Zea mays]
Length = 603
Score = 166 bits (421), Expect = 2e-40
Identities = 84/126 (66%), Positives = 99/126 (77%)
Frame = -1
Query: 588 KGMNVLSLFSGIGGAEVALHRLGIPLKNVVSVEKSEVNRNIVRSWWEQTNQKGNLIDLDD 409
+GMNVLSLFSGIGGAEVALHRLGI + V+SVEKSEVNR I++SWW+QT Q G LI++ D
Sbjct: 478 QGMNVLSLFSGIGGAEVALHRLGIRMNTVISVEKSEVNRTILKSWWDQT-QTGTLIEITD 536
Query: 408 VQLLDADRLEQLMSATGGFDLVIGGSPCNNLAGSNRVSRDGLEGKESSLFFDYCRILDLV 229
VQ L ++R+E + GGFDLVIGGSPCNNL GSNR RDGLEG+ S+LF Y RIL V
Sbjct: 537 VQTLSSERIEAYIRRIGGFDLVIGGSPCNNLTGSNRHHRDGLEGEHSALFHHYFRILHAV 596
Query: 228 KCMSAR 211
K + R
Sbjct: 597 KSIMER 602
>ref|NP_197042.1| putative protein; protein id: At5g15380.1 [Arabidopsis thaliana]
gi|11281153|pir||T49973 hypothetical protein F8M21.270 -
Arabidopsis thaliana gi|7671507|emb|CAB89348.1| putative
protein [Arabidopsis thaliana]
Length = 375
Score = 164 bits (414), Expect = 1e-39
Identities = 83/120 (69%), Positives = 96/120 (79%)
Frame = -1
Query: 585 GMNVLSLFSGIGGAEVALHRLGIPLKNVVSVEKSEVNRNIVRSWWEQTNQKGNLIDLDDV 406
G+NVLSLF+GIGG EVALHRL I + VVSVE S+ NRNI+RS+WEQTNQKG L + DV
Sbjct: 248 GINVLSLFTGIGGGEVALHRLQIKMNVVVSVEISDANRNILRSFWEQTNQKGILREFKDV 307
Query: 405 QLLDADRLEQLMSATGGFDLVIGGSPCNNLAGSNRVSRDGLEGKESSLFFDYCRILDLVK 226
Q LD + +E+LM GGFDLVIGGSPCNNLAG NR R GL G+ SSLFFDYCRIL+ V+
Sbjct: 308 QKLDDNTIERLMDEYGGFDLVIGGSPCNNLAGGNRHHRVGLGGEHSSLFFDYCRILEAVR 367
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,952,101
Number of Sequences: 1393205
Number of extensions: 11191833
Number of successful extensions: 31811
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 30618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31717
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
