Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002852A_C01 KMC002852A_c01
(704 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176592.1| hypothetical protein; protein id: At1g64090.1, ... 168 8e-41
ref|NP_194094.1| putative protein; protein id: At4g23630.1, supp... 166 3e-40
ref|NP_198975.1| putative protein; protein id: At5g41600.1, supp... 164 1e-39
ref|NP_566065.1| expressed protein; protein id: At2g46170.1, sup... 158 8e-38
ref|NP_192861.1| putative protein; protein id: At4g11220.1, supp... 157 1e-37
>ref|NP_176592.1| hypothetical protein; protein id: At1g64090.1, supported by cDNA:
gi_17381217 [Arabidopsis thaliana]
gi|6692111|gb|AAF24576.1|AC007764_18 F22C12.15
[Arabidopsis thaliana] gi|17381218|gb|AAL36421.1|
unknown protein [Arabidopsis thaliana]
gi|21436435|gb|AAM51418.1| unknown protein [Arabidopsis
thaliana]
Length = 255
Score = 168 bits (425), Expect = 8e-41
Identities = 82/122 (67%), Positives = 95/122 (77%)
Frame = -1
Query: 704 APPRIPVFHLPEEPFLEIASALRIEINHGFAALRDIGTGKDVKKFLIAIVGLWILSIVGS 525
+P IP H+PE+ L++AS LRIEIN GF LRDI +G+D+KKFL+ I GLW+LS VGS
Sbjct: 125 SPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGS 184
Query: 524 WCNFLTLFYINFVLLLTIPFLYDKYEDKIDPLAEKAAHEIKKQYVVFDAKVLSKVLSKIP 345
CNFLTL YI VLL TIP LY+KYEDK+D EKA EIKKQYV FD KVLSKV+SKIP
Sbjct: 185 SCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVMSKIP 244
Query: 344 KG 339
KG
Sbjct: 245 KG 246
>ref|NP_194094.1| putative protein; protein id: At4g23630.1, supported by cDNA:
39185., supported by cDNA: gi_15215585 [Arabidopsis
thaliana] gi|7486733|pir||T05595 hypothetical protein
F9D16.100 - Arabidopsis thaliana
gi|4454032|emb|CAA23029.1| putative protein [Arabidopsis
thaliana] gi|7269211|emb|CAB79318.1| putative protein
[Arabidopsis thaliana] gi|15215586|gb|AAK91338.1|
AT4g23630/F9D16_100 [Arabidopsis thaliana]
gi|21593466|gb|AAM65433.1| unknown [Arabidopsis
thaliana] gi|22137240|gb|AAM91465.1| AT4g23630/F9D16_100
[Arabidopsis thaliana]
Length = 275
Score = 166 bits (420), Expect = 3e-40
Identities = 82/127 (64%), Positives = 98/127 (76%)
Frame = -1
Query: 704 APPRIPVFHLPEEPFLEIASALRIEINHGFAALRDIGTGKDVKKFLIAIVGLWILSIVGS 525
+PP+IP H+PEEP L++AS LRIEIN GF++LR+I +G+D+KKFLIAI GLW+LSI+G
Sbjct: 150 SPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGG 209
Query: 524 WCNFLTLFYINFVLLLTIPFLYDKYEDKIDPLAEKAAHEIKKQYVVFDAKVLSKVLSKIP 345
NFLTL YI VLL T+P YDKYEDK+DPL EKA E+KKQY V D KVLSKIP
Sbjct: 210 CFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLD----EKVLSKIP 265
Query: 344 KGLLKGK 324
G LK K
Sbjct: 266 LGPLKNK 272
>ref|NP_198975.1| putative protein; protein id: At5g41600.1, supported by cDNA:
gi_14334529, supported by cDNA: gi_16323068 [Arabidopsis
thaliana] gi|10178014|dbj|BAB11466.1| contains
similarity to 24 kDa seed maturation
protein~gene_id:MBK23.13 [Arabidopsis thaliana]
gi|14334530|gb|AAK59673.1| unknown protein [Arabidopsis
thaliana] gi|16323069|gb|AAL15269.1| AT5g41600/MBK23_13
[Arabidopsis thaliana] gi|23297540|gb|AAN12890.1|
unknown protein [Arabidopsis thaliana]
Length = 257
Score = 164 bits (414), Expect = 1e-39
Identities = 79/125 (63%), Positives = 93/125 (74%)
Frame = -1
Query: 698 PRIPVFHLPEEPFLEIASALRIEINHGFAALRDIGTGKDVKKFLIAIVGLWILSIVGSWC 519
P IP H+PE+P L++ S LRIEIN G LR+I +GKDVKKF++ I GLW+LSI+GS
Sbjct: 131 PHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCY 190
Query: 518 NFLTLFYINFVLLLTIPFLYDKYEDKIDPLAEKAAHEIKKQYVVFDAKVLSKVLSKIPKG 339
NFLTLFY VLL TIP LY+KYEDK+D EKA EIKKQY V D KVL KV+SKIP+G
Sbjct: 191 NFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRG 250
Query: 338 LLKGK 324
L K
Sbjct: 251 ALNKK 255
>ref|NP_566065.1| expressed protein; protein id: At2g46170.1, supported by cDNA:
gi_15450758, supported by cDNA: gi_18491130 [Arabidopsis
thaliana] gi|25408969|pir||E84899 hypothetical protein
At2g46170 [imported] - Arabidopsis thaliana
gi|3702332|gb|AAC62889.1| expressed protein [Arabidopsis
thaliana] gi|15450759|gb|AAK96651.1| At2g46170/T3F17.18
[Arabidopsis thaliana] gi|18491131|gb|AAL69534.1|
At2g46170/T3F17.18 [Arabidopsis thaliana]
Length = 255
Score = 158 bits (399), Expect = 8e-38
Identities = 77/125 (61%), Positives = 96/125 (76%)
Frame = -1
Query: 698 PRIPVFHLPEEPFLEIASALRIEINHGFAALRDIGTGKDVKKFLIAIVGLWILSIVGSWC 519
P+IP H+PEE FL +AS+LR E+N F LR I G+D+KKFL+ +VGLWI+S+VG+W
Sbjct: 131 PQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWF 190
Query: 518 NFLTLFYINFVLLLTIPFLYDKYEDKIDPLAEKAAHEIKKQYVVFDAKVLSKVLSKIPKG 339
NFLTL YI FV+L T+P LY+K+EDK+DPLAEKA E++KQYVVFD KVLSKIP
Sbjct: 191 NFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFD----EKVLSKIPIA 246
Query: 338 LLKGK 324
LK K
Sbjct: 247 SLKAK 251
>ref|NP_192861.1| putative protein; protein id: At4g11220.1, supported by cDNA:
23536., supported by cDNA: gi_14334419, supported by
cDNA: gi_15081760, supported by cDNA: gi_16209686
[Arabidopsis thaliana] gi|7486694|pir||T13013
hypothetical protein F8L21.10 - Arabidopsis thaliana
gi|5596468|emb|CAB51406.1| putative protein [Arabidopsis
thaliana] gi|7267821|emb|CAB81223.1| putative protein
[Arabidopsis thaliana] gi|14334420|gb|AAK59408.1|
unknown protein [Arabidopsis thaliana]
gi|15081761|gb|AAK82535.1| AT4g11220/F8L21_10
[Arabidopsis thaliana] gi|16209687|gb|AAL14401.1|
AT4g11220/F8L21_10 [Arabidopsis thaliana]
gi|21592415|gb|AAM64366.1| unknown [Arabidopsis
thaliana] gi|26983898|gb|AAN86201.1| unknown protein
[Arabidopsis thaliana]
Length = 271
Score = 157 bits (397), Expect = 1e-37
Identities = 77/127 (60%), Positives = 95/127 (74%)
Frame = -1
Query: 704 APPRIPVFHLPEEPFLEIASALRIEINHGFAALRDIGTGKDVKKFLIAIVGLWILSIVGS 525
+PP+IP H+PEEP L++AS LRIEIN G ++LR+I +G+D+KKFL AI GLW+LSI+G
Sbjct: 146 SPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGG 205
Query: 524 WCNFLTLFYINFVLLLTIPFLYDKYEDKIDPLAEKAAHEIKKQYVVFDAKVLSKVLSKIP 345
+FLTL YI VLL T+P YDKYEDK+D EKA E+KKQY V DA KV SKIP
Sbjct: 206 CYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDA----KVFSKIP 261
Query: 344 KGLLKGK 324
+G LK K
Sbjct: 262 RGPLKDK 268
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 593,839,344
Number of Sequences: 1393205
Number of extensions: 13241151
Number of successful extensions: 35455
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 34081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35410
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
