Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002847A_C01 KMC002847A_c01
(448 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65866.1| unknown [Arabidopsis thaliana] 79 1e-14
ref|NP_197853.1| putative protein; protein id: At5g24650.1, supp... 79 1e-14
ref|NP_190525.1| putative protein; protein id: At3g49560.1, supp... 78 3e-14
pir||T07907 hydroxyproline-rich glycoprotein GAS28 precursor - C... 51 3e-06
gb|AAF18323.1|AF134858_2 espin [Mus musculus] 50 6e-06
>gb|AAM65866.1| unknown [Arabidopsis thaliana]
Length = 246
Score = 79.0 bits (193), Expect = 1e-14
Identities = 40/67 (59%), Positives = 44/67 (64%)
Frame = +1
Query: 247 VMGTLTGDASSPFPTPPPNASLNPQAMASLNQAQALAGGPLVQARNFAVMTGVNAGITSV 426
V G G P A ++PQAMASL Q QAL GGPLVQARNFA +TGVNAGI V
Sbjct: 50 VQGAFIGGLMGTLSPEMPQAGIDPQAMASLKQTQALVGGPLVQARNFAAITGVNAGIACV 109
Query: 427 LTRIRGK 447
+ RIRGK
Sbjct: 110 MKRIRGK 116
Score = 65.1 bits (157), Expect = 2e-10
Identities = 32/60 (53%), Positives = 38/60 (63%)
Frame = +3
Query: 75 MVAKILPQQLLNPIEQLQTRFKEVESGFKLWLSKQSIAVEAAVVTTTSAAQGAAIGACHG 254
M L + NPI+Q Q +FKE+E+GFK WLSKQ + VEAAVVT QGA IG G
Sbjct: 1 MAVMSLMKDQQNPIQQFQVKFKEIETGFKSWLSKQKLPVEAAVVTAMGGVQGAFIGGLMG 60
>ref|NP_197853.1| putative protein; protein id: At5g24650.1, supported by cDNA:
5684., supported by cDNA: gi_17979478 [Arabidopsis
thaliana] gi|10177865|dbj|BAB11217.1|
emb|CAB62460.1~gene_id:K18P6.19~similar to unknown
protein [Arabidopsis thaliana]
gi|17979479|gb|AAL50076.1| AT5g24650/K18P6_19
[Arabidopsis thaliana] gi|22655440|gb|AAM98312.1|
At5g24650/K18P6_19 [Arabidopsis thaliana]
Length = 259
Score = 79.0 bits (193), Expect = 1e-14
Identities = 40/67 (59%), Positives = 44/67 (64%)
Frame = +1
Query: 247 VMGTLTGDASSPFPTPPPNASLNPQAMASLNQAQALAGGPLVQARNFAVMTGVNAGITSV 426
V G G P A ++PQAMASL Q QAL GGPLVQARNFA +TGVNAGI V
Sbjct: 63 VQGAFIGGLMGTLSPEMPQAGIDPQAMASLKQTQALVGGPLVQARNFAAITGVNAGIACV 122
Query: 427 LTRIRGK 447
+ RIRGK
Sbjct: 123 MKRIRGK 129
Score = 66.6 bits (161), Expect = 6e-11
Identities = 33/64 (51%), Positives = 40/64 (61%)
Frame = +3
Query: 63 KQGVMVAKILPQQLLNPIEQLQTRFKEVESGFKLWLSKQSIAVEAAVVTTTSAAQGAAIG 242
K+ M L + NPI+Q Q +FKE+E+GFK WLSKQ + VEAAVVT QGA IG
Sbjct: 10 KRETMAVMSLMKDQQNPIQQFQVKFKEIETGFKSWLSKQKLPVEAAVVTAMGGVQGAFIG 69
Query: 243 ACHG 254
G
Sbjct: 70 GLMG 73
>ref|NP_190525.1| putative protein; protein id: At3g49560.1, supported by cDNA:
15698., supported by cDNA: gi_13430557 [Arabidopsis
thaliana] gi|11285728|pir||T46233 hypothetical protein
T9C5.150 - Arabidopsis thaliana
gi|6561956|emb|CAB62460.1| putative protein [Arabidopsis
thaliana] gi|13430558|gb|AAK25901.1|AF360191_1 unknown
protein [Arabidopsis thaliana]
gi|21553682|gb|AAM62775.1| unknown [Arabidopsis
thaliana] gi|25054947|gb|AAN71950.1| unknown protein
[Arabidopsis thaliana]
Length = 261
Score = 77.8 bits (190), Expect = 3e-14
Identities = 42/81 (51%), Positives = 49/81 (59%)
Frame = +1
Query: 205 SPPPAPPKVPPSAPVMGTLTGDASSPFPTPPPNASLNPQAMASLNQAQALAGGPLVQARN 384
S P V + V G G P A ++PQA+AS+ QAQAL GGP VQARN
Sbjct: 54 SIPVEAAVVSTMSGVQGAFIGGLMGTLSPEMPQAGVDPQAIASMKQAQALVGGPWVQARN 113
Query: 385 FAVMTGVNAGITSVLTRIRGK 447
FA +TGVNAGI SV+ RIRGK
Sbjct: 114 FAAITGVNAGIASVMKRIRGK 134
Score = 67.8 bits (164), Expect = 3e-11
Identities = 37/65 (56%), Positives = 43/65 (65%)
Frame = +3
Query: 60 GKQGVMVAKILPQQLLNPIEQLQTRFKEVESGFKLWLSKQSIAVEAAVVTTTSAAQGAAI 239
G+ M + QQ NPI+Q Q +FKEVE+ FK WLSKQSI VEAAVV+T S QGA I
Sbjct: 16 GEMMAMASLFNDQQ--NPIQQFQVKFKEVETNFKTWLSKQSIPVEAAVVSTMSGVQGAFI 73
Query: 240 GACHG 254
G G
Sbjct: 74 GGLMG 78
>pir||T07907 hydroxyproline-rich glycoprotein GAS28 precursor - Chlamydomonas
reinhardtii gi|2384728|gb|AAB69862.1|
hydroxyproline-rich glycoprotein gas28p precursor
[Chlamydomonas reinhardtii]
Length = 446
Score = 51.2 bits (121), Expect = 3e-06
Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +1
Query: 151 PASNSGSPSNPSPSKPPSSPPPAPPKVPPSAPVMGTLTGDASSPFPTPPPNASLNPQAMA 330
P+ + SP +PSP PPS PPP PP P P + DA + PPP + P++
Sbjct: 226 PSPSPPSPPSPSPPPPPSPPPPPPPTPSPPPPELPPAQPDAPARKRPPPPASPPPPRSDF 285
Query: 331 SLNQAQALAGGPLVQARNFAVMTGVNAGITSV--LTRI 438
Q Q AR +MT + IT V LTRI
Sbjct: 286 PFCQCQR-------NARGSRLMTTASNNITVVNGLTRI 316
Score = 34.3 bits (77), Expect = 0.36
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = +1
Query: 160 NSGSPSNPSPSKPPSSPPPAPPKVPPSAPVMGTLTGDASSPFPTPPP 300
N+ P PSPS P SPP P PPS P P P+PPP
Sbjct: 219 NAPPPHVPSPSPP--SPPSPSPPPPPSPP-------PPPPPTPSPPP 256
>gb|AAF18323.1|AF134858_2 espin [Mus musculus]
Length = 532
Score = 50.1 bits (118), Expect = 6e-06
Identities = 36/114 (31%), Positives = 46/114 (39%), Gaps = 10/114 (8%)
Frame = +1
Query: 4 VGPPRMKLSLHDAA*KWNLGSKG*WWRRYYHSSFSTQ*SSFK--LASRKSNPASNSGSPS 177
+G P S +D+ + SKG +R + + S+ L KS P G PS
Sbjct: 40 LGSPTSTFSNYDSCSSSHSSSKG---QRSNRGARAADLQSYMDMLNPEKSLPRGKLGKPS 96
Query: 178 NPSPS--------KPPSSPPPAPPKVPPSAPVMGTLTGDASSPFPTPPPNASLN 315
P PS PP PPP PP PP P GT S +P P P L+
Sbjct: 97 PPPPSTTTTTKLPSPPPPPPPPPPSFPPPPPPTGTQPPPPSPGYPAPNPPVGLH 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,040,708
Number of Sequences: 1393205
Number of extensions: 12125994
Number of successful extensions: 295141
Number of sequences better than 10.0: 9530
Number of HSP's better than 10.0 without gapping: 99272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202240
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
