Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002841A_C01 KMC002841A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00064659.1| hypothetical protein [Microbulbifer degradans... 38 0.075
sp|O07345|CHLD_SYNP7 Magnesium-chelatase subunit chlD (Mg-protop... 38 0.075
ref|NP_477528.1| wsv006 [shrimp white spot syndrome virus] gi|17... 37 0.097
gb|AAK77702.1|AF369029_33 ORF33 [shrimp white spot syndrome virus] 37 0.097
ref|ZP_00065777.1| hypothetical protein [Microbulbifer degradans... 37 0.13
>ref|ZP_00064659.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 791
Score = 37.7 bits (86), Expect = 0.075
Identities = 33/83 (39%), Positives = 38/83 (45%)
Frame = +2
Query: 221 SPSSPSSYSSDEIDLHPPTLGSRTKFSRLS*TSSMISTISS*SSISFSSTSTFLVIHSSS 400
S SS SS SS T S + S S +SS S+ SS SS S SSTS+ SSS
Sbjct: 295 SGSSTSSSSSSSSSSGSSTSSSSSSSSTGSTSSSSSSSTSSTSSSSSSSTSSTSSSSSSS 354
Query: 401 D*ISSKGGGSRVEGGGSCAGGGA 469
SS S S +G GA
Sbjct: 355 SSTSSSSSSSSSSSSSSTSGSGA 377
Score = 30.8 bits (68), Expect = 9.1
Identities = 28/81 (34%), Positives = 37/81 (45%)
Frame = +2
Query: 185 TTPSNLEQLES*SPSSPSSYSSDEIDLHPPTLGSRTKFSRLS*TSSMISTISS*SSISFS 364
+T S+ S S+ SS SS + S T + S +SS ST SS SS S +
Sbjct: 298 STSSSSSSSSSSGSSTSSSSSSSSTGSTSSSSSSSTSSTSSSSSSSTSSTSSSSSSSSST 357
Query: 365 STSTFLVIHSSSD*ISSKGGG 427
S+S+ SSS S G G
Sbjct: 358 SSSSSSSSSSSSSSTSGSGAG 378
>sp|O07345|CHLD_SYNP7 Magnesium-chelatase subunit chlD (Mg-protoporphyrin IX chelatase)
(Mg-chelatase subunit D) gi|2159935|dbj|BAA20346.1|
magnesium-chelatase subunit [Synechococcus sp.]
Length = 677
Score = 37.7 bits (86), Expect = 0.075
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = -2
Query: 468 APPPAQLPPPSTRLPPPFDEIQSDDEWITK---KVDVEENDIDDH--DDIVDIIELV*DN 304
+PPP + PP + PPP E Q +DE + + D END DD D I + +
Sbjct: 328 SPPPPEEPPAAPPPPPPSQEQQGEDEQNEQEPDEPDEPENDSDDQQPDTPPPIPKEFVFD 387
Query: 303 LENLVLDPNV 274
E +VLDP+V
Sbjct: 388 AEGVVLDPSV 397
>ref|NP_477528.1| wsv006 [shrimp white spot syndrome virus]
gi|17016404|gb|AAL33010.1| wsv006 [shrimp white spot
syndrome virus] gi|19481654|gb|AAL88930.1| WSSV062
[shrimp white spot syndrome virus]
Length = 295
Score = 37.4 bits (85), Expect = 0.097
Identities = 28/94 (29%), Positives = 44/94 (46%)
Frame = -2
Query: 489 TPITQPLAPPPAQLPPPSTRLPPPFDEIQSDDEWITKKVDVEENDIDDHDDIVDIIELV* 310
TP P P PPP TR P P + DD+ +D ++NDID+ D + +E
Sbjct: 152 TPTPTPPPTPTPTPPPPPTRTPSPSSSLGEDDD-DDIDIDFDDNDIDEFLDSGEEME--- 207
Query: 309 DNLENLVLDPNVGGCKSISSEE*LDGDDGDYDSS 208
++ E LD + E + G++ D+D+S
Sbjct: 208 EDEEEEDLDTLLS-----RLETGMSGEEVDFDAS 236
>gb|AAK77702.1|AF369029_33 ORF33 [shrimp white spot syndrome virus]
Length = 295
Score = 37.4 bits (85), Expect = 0.097
Identities = 28/94 (29%), Positives = 44/94 (46%)
Frame = -2
Query: 489 TPITQPLAPPPAQLPPPSTRLPPPFDEIQSDDEWITKKVDVEENDIDDHDDIVDIIELV* 310
TP P P PPP TR P P + DD+ +D ++NDID+ D + +E
Sbjct: 152 TPTPTPPPTPTPTPPPPPTRTPSPSSSLGEDDD-DDIDIDFDDNDIDEFLDSGEEME--- 207
Query: 309 DNLENLVLDPNVGGCKSISSEE*LDGDDGDYDSS 208
++ E LD + E + G++ D+D+S
Sbjct: 208 EDEEEEDLDTLLS-----RLETGMSGEEVDFDAS 236
>ref|ZP_00065777.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 584
Score = 37.0 bits (84), Expect = 0.13
Identities = 33/91 (36%), Positives = 41/91 (44%)
Frame = +2
Query: 194 SNLEQLES*SPSSPSSYSSDEIDLHPPTLGSRTKFSRLS*TSSMISTISS*SSISFSSTS 373
S+ S S SS SS SS + S + S S +S+ S+ SS SS S SS+S
Sbjct: 266 SSSSSSSSSSSSSSSSTSSSSSSSSSTSSSSSSSSSSSSSSSTSSSSSSSSSSSSSSSSS 325
Query: 374 TFLVIHSSSD*ISSKGGGSRVEGGGSCAGGG 466
T SSS SS S S +GGG
Sbjct: 326 TSSSSSSSSSSSSSSSSSSSSSSSSSSSGGG 356
Score = 35.8 bits (81), Expect = 0.28
Identities = 36/104 (34%), Positives = 45/104 (42%)
Frame = +2
Query: 185 TTPSNLEQLES*SPSSPSSYSSDEIDLHPPTLGSRTKFSRLS*TSSMISTISS*SSISFS 364
T S+ S S SS SS +S T S + S S +SS S+ SS SS S S
Sbjct: 262 TGSSSSSSSSSSSSSSSSSSTSSSSSSSSSTSSSSSSSSSSSSSSSTSSSSSSSSSSSSS 321
Query: 365 STSTFLVIHSSSD*ISSKGGGSRVEGGGSCAGGGARG*VIGVLF 496
S+S+ SSS SS S S + GG GV+F
Sbjct: 322 SSSSTSSSSSSSSSSSSSSSSSSSSSSSSSSSGG------GVIF 359
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,633,348
Number of Sequences: 1393205
Number of extensions: 8341380
Number of successful extensions: 85841
Number of sequences better than 10.0: 221
Number of HSP's better than 10.0 without gapping: 44223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76326
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
