Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002840A_C01 KMC002840A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC55695.1| P0453E05.6 [Oryza sativa (japonica cultivar-group)] 43 0.002
ref|XP_235497.1| similar to myocardin-related transcription fact... 42 0.003
ref|NP_201548.1| formin-like protein; protein id: At5g67470.1 [A... 42 0.003
gb|EAA27309.1| hypothetical protein [Neurospora crassa] 42 0.003
pir||S37671 MHC class III histocompatibility antigen HLA-B-assoc... 40 0.016
>dbj|BAC55695.1| P0453E05.6 [Oryza sativa (japonica cultivar-group)]
Length = 1627
Score = 42.7 bits (99), Expect = 0.002
Identities = 32/100 (32%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Frame = -3
Query: 509 PPRAIPYQPPVHNGLGTVPSPFTSQPIVSGGLVS----------SPSSRGGVQSLNQEAV 360
PP P PP +GL ++P P P++S G + P R GV N
Sbjct: 860 PPLPPPPPPPASSGLSSIPPPPPPPPLMSFGAQTRTFVPPPPPPPPPPRSGVGG-NTPPA 918
Query: 359 APIPRARSFPPRKRPDHPPP-------SEGPLPPQKRPDP 261
P P RS P P PPP S P PP P P
Sbjct: 919 PPPPPLRSTVPAISPPPPPPPPPLKPSSGAPCPPPPPPPP 958
Score = 32.7 bits (73), Expect = 2.5
Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Frame = -3
Query: 512 LPP-----RAIPYQPPVHNGLGTVPSPFTSQPIVSGGLVSSPSSRGGVQSLNQEAVAPIP 348
LPP A P PP LG P P P G P + GG L P P
Sbjct: 1094 LPPPGGRASAPPPPPPPSTRLGAPPPP--PPPGAGGRAPPPPPAPGG--RLGGPPPPPPP 1149
Query: 347 RARSFPPRKRPDHPPPSEG 291
R+ PP + P PPP G
Sbjct: 1150 GGRAPPPPRGPGAPPPPGG 1168
Score = 31.6 bits (70), Expect = 5.6
Identities = 26/80 (32%), Positives = 27/80 (33%)
Frame = -3
Query: 500 AIPYQPPVHNGLGTVPSPFTSQPIVSGGLVSSPSSRGGVQSLNQEAVAPIPRARSFPPRK 321
A P PP P P PI G SP + P P AR PP
Sbjct: 1014 APPPPPPPPTTHFNAPPPPPPPPITRSGAPPSPPPPP-----SPPPPPPPPGARPGPP-- 1066
Query: 320 RPDHPPPSEGPLPPQKRPDP 261
P PPP P PP P P
Sbjct: 1067 -PPPPPPGARPGPPPPPPPP 1085
>ref|XP_235497.1| similar to myocardin-related transcription factor A [Mus musculus]
[Rattus norvegicus]
Length = 1024
Score = 42.4 bits (98), Expect = 0.003
Identities = 28/87 (32%), Positives = 41/87 (46%), Gaps = 6/87 (6%)
Frame = -3
Query: 494 PYQPPVHNGLGTVPSPFTSQPIVSGGLVSSPSSRGGVQSLNQEAVAPIPRARSFPPRKRP 315
P QP H G+VPSP S+ + L+ S +S Q L+Q +AP P F + P
Sbjct: 221 PEQPASHESQGSVPSPLESR---ASDLLPSATSISPTQVLSQLPMAPDPGETLFLAEQPP 277
Query: 314 DHPPP------SEGPLPPQKRPDPRIM 252
PPP + G + P +P P ++
Sbjct: 278 LPPPPLLPPSLTSGSIVPTAKPAPTLI 304
>ref|NP_201548.1| formin-like protein; protein id: At5g67470.1 [Arabidopsis thaliana]
gi|9757868|dbj|BAB08455.1| formin-like protein
[Arabidopsis thaliana]
Length = 899
Score = 42.4 bits (98), Expect = 0.003
Identities = 35/94 (37%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Frame = -3
Query: 512 LPPRAIPYQPPVHNGLGT----VP----SPFTSQPIVSGGLVSSPSSRGGVQSLNQEAVA 357
LPP P QPP GL + +P P SQP P +R Q++ QE +
Sbjct: 316 LPP---PVQPPPLRGLESDEQELPYSQNKPKFSQP-------PPPPNRAAFQAITQEK-S 364
Query: 356 PIPRARSFPPRKRPDHPPPSEGPL----PPQKRP 267
P+P R PP + PPP PL PPQKRP
Sbjct: 365 PVPPPRRSPPPLQTPPPPPPPPPLAPPPPPQKRP 398
>gb|EAA27309.1| hypothetical protein [Neurospora crassa]
Length = 885
Score = 42.4 bits (98), Expect = 0.003
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Frame = -3
Query: 485 PPVHNGLGTV-PSPFTSQPIVSGGLVS--SPS-SRGGVQSLNQEAVAPIPRARSFPPRKR 318
PP H G G+V P ++ I SGG + +PS S GG S N A AP +S P ++
Sbjct: 716 PPKHEGPGSVPPDSLAAESIRSGGAFAQGNPSASAGGSASQNPRAKAPGTAHQSHPEAQQ 775
Query: 317 PDHPPPSEGPLPP-------QKRPDPRIMH 249
P H P +G P + PDP H
Sbjct: 776 PKHENPEQGAPAPTYIFHHGRNLPDPAGPH 805
>pir||S37671 MHC class III histocompatibility antigen HLA-B-associated protein 2
[similarity] - human gi|29375|emb|CAA78744.1| Bat2 [Homo
sapiens]
Length = 1870
Score = 40.0 bits (92), Expect = 0.016
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Frame = -3
Query: 512 LPPRAIPYQPPVHNGLGTVPSPFTSQPIVSGGLVSSPSSRGGVQSLNQEAVAPIPRARSF 333
L R +P+ H+ + SP T P + G SL + A++P PR R
Sbjct: 1115 LQTRRLPHPRREHSPRSS-RSPTTRSPTLHRAPARFTCPGVGESSLPEGAISPGPRRREA 1173
Query: 332 PPRKRPDHPPPSE---------GPLPPQKRP 267
PP+ P PP++ GPLPP K P
Sbjct: 1174 PPQVCPGWSPPAKSLAPKKPPTGPLPPSKEP 1204
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,551,266
Number of Sequences: 1393205
Number of extensions: 12330848
Number of successful extensions: 81582
Number of sequences better than 10.0: 866
Number of HSP's better than 10.0 without gapping: 51646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71515
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
