Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002835A_C01 KMC002835A_c01
(775 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA16230.1| mature parasite-infected erythrocyte surface anti... 48 2e-04
gb|EAA17992.1| probable RNA 3'-terminal phosphate cyclase-like p... 47 2e-04
ref|NP_040134.1| tegument protein and transactivator [Human herp... 46 7e-04
gb|EAA20646.1| hypothetical protein [Plasmodium yoelii yoelii] 45 0.001
gb|AAK50002.1| ORF73 [Human herpesvirus 8] 44 0.003
>gb|EAA16230.1| mature parasite-infected erythrocyte surface antigen [Plasmodium
yoelii yoelii]
Length = 343
Score = 47.8 bits (112), Expect = 2e-04
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Frame = -3
Query: 773 ENTDGPNDEGKLNTADEELQA---SKEKVDDKGAEGSDAVQNKDDGSGEPEKSEAAPTTE 603
EN +G N+E + N E ++ ++EK D++ E S+ ++++ EK++ E
Sbjct: 240 ENGEGKNEESEKNDEKSEEKSEGKNEEKEDEEEDEKSEGKNDEENDEKNDEKNDEENDEE 299
Query: 602 QKIEVEGENKEEHDRGIHESGEIK-DKEGAKVNDEEHFKVHDIN 474
+ + + EN EE+D E + K D+E K NDEE K ++N
Sbjct: 300 EDEKNDEENDEENDEEEDEKNDKKNDEEEDKKNDEEDEKNEEVN 343
>gb|EAA17992.1| probable RNA 3'-terminal phosphate cyclase-like protein [Plasmodium
yoelii yoelii]
Length = 555
Score = 47.4 bits (111), Expect = 2e-04
Identities = 29/106 (27%), Positives = 52/106 (48%), Gaps = 11/106 (10%)
Frame = -3
Query: 752 DEGKLNTADEELQASKEKVDDKGAEGSDAVQNKDDGSGEPEKSEAA--------PTTEQK 597
DEG+++ DEE + + + D++ E D + +D+ E E E E++
Sbjct: 317 DEGQVDENDEEKEEEEVEEDEEEEEKDDEEEEEDENEEEDENEEDENEEVEEDDENEEEE 376
Query: 596 IEVEGENKEEHDRGIHESGEIKDKEGAKVND---EEHFKVHDINQK 468
E E E +E+ D + E E +++E A+V + EE K H +N +
Sbjct: 377 DEDENEEEEDEDEEVEEDDENEEEEDAEVEEDEGEEKEKKHQLNNR 422
>ref|NP_040134.1| tegument protein and transactivator [Human herpesvirus 3]
gi|136924|sp|P09263|UL47_VZVD ALPHA TRANS-INDUCING
FACTOR 91.8 KD PROTEIN gi|73818|pir||TNBE11 91.8K alpha
trans-inducing protein - human herpesvirus 3
gi|60000|emb|CAA27894.1| ORF11 (AA1-819) [Human
herpesvirus 3]
Length = 819
Score = 45.8 bits (107), Expect = 7e-04
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Frame = -3
Query: 770 NTDGPNDEGKLNTADEELQASKEKVDDKG-AEGSDAVQNKDDGSGEPEKSEAAPTTEQKI 594
NTD +DEG+ EE +A ++ +DD+G AE +A ++ D GE E+ EA E I
Sbjct: 115 NTDAIDDEGEA----EEGEAEEDAIDDEGEAEEGEAEEDAIDDEGEAEEGEA---EEDAI 167
Query: 593 EVEGENKE-EHDRGIHESGE-----IKDKEGAKVNDEEHFKVHDINQKTESGVTVN 444
+ EGE +E E + G E GE I D+ A+ + E + D + E +V+
Sbjct: 168 DDEGEAEEGEAEEGEAEEGEAEEDAIDDEGEAEEDAAEEDAIDDEGEAEEDYFSVS 223
>gb|EAA20646.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 496
Score = 45.1 bits (105), Expect = 0.001
Identities = 30/91 (32%), Positives = 42/91 (45%)
Frame = -3
Query: 770 NTDGPNDEGKLNTADEELQASKEKVDDKGAEGSDAVQNKDDGSGEPEKSEAAPTTEQKIE 591
N DG N E K + +E+ DDK + D ++N D+ E E E E++ E
Sbjct: 150 NPDGSNIERKTDKEEEDN-------DDKNRDNKDVIENSDEEGDEEEYEE---EDEEEDE 199
Query: 590 VEGENKEEHDRGIHESGEIKDKEGAKVNDEE 498
E E EE D E E +D+E + DEE
Sbjct: 200 EEDEEDEEEDEEEDEEDEEEDEEEDEEEDEE 230
Score = 43.5 bits (101), Expect = 0.003
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Frame = -3
Query: 773 ENTDGPNDEGKLNTADEELQASKEKVDDKGAEGSDAVQNKDDGSGEPEKSEAAPTTEQKI 594
EN+D DE + DEE +++ D++ E D ++D + E+ E E++
Sbjct: 179 ENSDEEGDEEEYEEEDEEEDEEEDEEDEEEDEEEDEEDEEEDEEEDEEEDEEEDEEEEEE 238
Query: 593 EVEGENKEEHDRGI-------HESGEIKDKEGAKVNDEEHFKVHDINQKTE 462
+ + +N++E + E K+KE DEE K H Q E
Sbjct: 239 DDDEDNEKEEKEDVKGGETKPEGEEEEKEKEHDDAKDEEEDKEHSDTQNEE 289
Score = 43.5 bits (101), Expect = 0.003
Identities = 36/125 (28%), Positives = 57/125 (44%), Gaps = 20/125 (16%)
Frame = -3
Query: 773 ENTDGPNDEGKLNTADEELQASKEKVDDKGAE----GSDAVQNK--DDGSGEPEKSEAAP 612
E D DE + D+E +EK D KG E G + + K DD E E E +
Sbjct: 225 EEEDEEEDEEEEEEDDDEDNEKEEKEDVKGGETKPEGEEEEKEKEHDDAKDEEEDKEHSD 284
Query: 611 TTEQKIEVEG-------ENKE-------EHDRGIHESGEIKDKEGAKVNDEEHFKVHDIN 474
T ++ + E ENKE E D+ ++ + DKE K+N++++ HD +
Sbjct: 285 TQNEEEDKEHSDAKNEEENKEHSDTQNEEEDKEHSDTKDEDDKEKIKLNNKDNSSEHDDD 344
Query: 473 QKTES 459
+KT +
Sbjct: 345 EKTSN 349
Score = 41.6 bits (96), Expect = 0.013
Identities = 25/97 (25%), Positives = 43/97 (43%)
Frame = -3
Query: 773 ENTDGPNDEGKLNTADEELQASKEKVDDKGAEGSDAVQNKDDGSGEPEKSEAAPTTEQKI 594
+ + DE + DEE + E+ D++ E D + ++D + EK E +
Sbjct: 198 DEEEDEEDEEEDEEEDEEDEEEDEEEDEEEDEEEDEEEEEEDDDEDNEKEEKEDVKGGET 257
Query: 593 EVEGENKEEHDRGIHESGEIKDKEGAKVNDEEHFKVH 483
+ EGE +E+ E +DKE + +EE K H
Sbjct: 258 KPEGEEEEKEKEHDDAKDEEEDKEHSDTQNEEEDKEH 294
Score = 36.2 bits (82), Expect = 0.54
Identities = 29/105 (27%), Positives = 42/105 (39%), Gaps = 1/105 (0%)
Frame = -3
Query: 773 ENTDGPNDEGKLNTADEELQASKEKVDDKGAEGSDAVQNKDDGSGEPEKSEAAPTTEQK- 597
+ D DE + DEE +E+ DD + ++ G +PE E E
Sbjct: 213 DEEDEEEDEEEDEEEDEEEDEEEEEEDDDEDNEKEEKEDVKGGETKPEGEEEEKEKEHDD 272
Query: 596 IEVEGENKEEHDRGIHESGEIKDKEGAKVNDEEHFKVHDINQKTE 462
+ E E+KE D E +DKE + +EE K H Q E
Sbjct: 273 AKDEEEDKEHSD----TQNEEEDKEHSDAKNEEENKEHSDTQNEE 313
>gb|AAK50002.1| ORF73 [Human herpesvirus 8]
Length = 1003
Score = 43.5 bits (101), Expect = 0.003
Identities = 26/92 (28%), Positives = 46/92 (49%)
Frame = -3
Query: 773 ENTDGPNDEGKLNTADEELQASKEKVDDKGAEGSDAVQNKDDGSGEPEKSEAAPTTEQKI 594
++ D +DE + T DEE + E+ D++ E D +++D + E+ + E+
Sbjct: 324 DDNDNKDDEEEQET-DEEDEEDDEEDDEEDDEEDDEEDDEEDDEEDDEEDDEEEDEEEDE 382
Query: 593 EVEGENKEEHDRGIHESGEIKDKEGAKVNDEE 498
E E E +EE D + + +D+E K DEE
Sbjct: 383 EEEDEEEEEEDEEDDDDEDNEDEEEDKKEDEE 414
Score = 37.0 bits (84), Expect = 0.32
Identities = 25/86 (29%), Positives = 38/86 (44%)
Frame = -3
Query: 737 NTADEELQASKEKVDDKGAEGSDAVQNKDDGSGEPEKSEAAPTTEQKIEVEGENKEEHDR 558
N DEE Q + E+ ++ E + +DD + E E + + E E E++EE D
Sbjct: 328 NKDDEEEQETDEEDEEDDEEDDEEDDEEDDEEDDEEDDEEDDEEDDEEEDEEEDEEEEDE 387
Query: 557 GIHESGEIKDKEGAKVNDEEHFKVHD 480
E E +D + DEE K D
Sbjct: 388 EEEEEDE-EDDDDEDNEDEEEDKKED 412
Score = 34.3 bits (77), Expect = 2.0
Identities = 24/104 (23%), Positives = 45/104 (43%)
Frame = -3
Query: 773 ENTDGPNDEGKLNTADEELQASKEKVDDKGAEGSDAVQNKDDGSGEPEKSEAAPTTEQKI 594
EN D G N +E Q K+ D+K E +D+ E + E +++
Sbjct: 302 ENNQAGEDNGD-NEISKESQVDKDDNDNKDDEEEQETDEEDEEDDEEDDEEDDEEDDEED 360
Query: 593 EVEGENKEEHDRGIHESGEIKDKEGAKVNDEEHFKVHDINQKTE 462
+ E +++E+ + E E +D+E +EE + D ++ E
Sbjct: 361 DEE-DDEEDDEEDDEEEDEEEDEEEEDEEEEEEDEEDDDDEDNE 403
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 641,212,874
Number of Sequences: 1393205
Number of extensions: 14205484
Number of successful extensions: 56489
Number of sequences better than 10.0: 698
Number of HSP's better than 10.0 without gapping: 46470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54193
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
