Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002833A_C01 KMC002833A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680142.1| similar to putative RNA helicase A; protein id:... 37 0.14
pir||T06053 probable ubiquitin-dependent proteolytic protein - A... 32 3.4
ref|NP_660506.1| NADH dehydrogenase I chain C, chain D [Buchnera... 32 4.5
ref|XP_233803.1| similar to ribosomal protein L7a, cytosolic [va... 31 7.6
ref|NP_181689.1| putative non-LTR retroelement reverse transcrip... 31 9.9
>ref|NP_680142.1| similar to putative RNA helicase A; protein id: At5g04895.1
[Arabidopsis thaliana]
Length = 581
Score = 37.0 bits (84), Expect = 0.14
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -1
Query: 521 EDDESPPDVTDHMLKLLGKRNESKRRS 441
ED +SPPDVTD+MLKLLG R +RRS
Sbjct: 555 EDADSPPDVTDNMLKLLGGR---RRRS 578
>pir||T06053 probable ubiquitin-dependent proteolytic protein - Arabidopsis
thaliana gi|4539312|emb|CAB38813.1| putative
ubiquitin-dependent proteolytic protein [Arabidopsis
thaliana] gi|7270876|emb|CAB80556.1| putative
ubiquitin-dependent proteolytic protein [Arabidopsis
thaliana]
Length = 315
Score = 32.3 bits (72), Expect = 3.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 140 STSRADCCLN*TP*MDYKYPE-PFPPPPGRGKMKTKQRD 253
S DC ++ P +DYK PE P P P +G+ K K+ D
Sbjct: 171 SIIETDCEVDFAPPLDYKEPERPVAPAPAKGEAKAKEVD 209
>ref|NP_660506.1| NADH dehydrogenase I chain C, chain D [Buchnera aphidicola str. Sg
(Schizaphis graminum)] gi|25008853|sp|Q8K9Y5|NUCD_BUCAP
NADH-quinone oxidoreductase chain C/D (NADH
dehydrogenase I, chain C/D) (NDH-1, chain C/D)
gi|21623051|gb|AAM67717.1| NADH dehydrogenase I chain C,
chain D [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
Length = 597
Score = 32.0 bits (71), Expect = 4.5
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Frame = -1
Query: 206 MVQDTYSPFTVFSLGSSLLLKSNEYF-SRPYPANLFFCMHKV 84
+VQDT F V + SLLLK ++ S P P N+ F +H V
Sbjct: 36 VVQDTCIDFPVIWINKSLLLKVGKFLSSSPKPYNMLFDLHGV 77
>ref|XP_233803.1| similar to ribosomal protein L7a, cytosolic [validated] - rat
[Rattus norvegicus]
Length = 201
Score = 31.2 bits (69), Expect = 7.6
Identities = 15/32 (46%), Positives = 16/32 (49%)
Frame = -2
Query: 286 WDRIYLFVRLGIPLLCLHFPPPWRGWKWFRIL 191
W R LF RL IP H P PW G + R L
Sbjct: 65 WQRAILFKRLKIPPAINHSPRPWTGKQRLRCL 96
>ref|NP_181689.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g41580.1 [Arabidopsis thaliana]
gi|7488322|pir||T00814 RNA-directed DNA polymerase
homolog At2g41580 - Arabidopsis thaliana
gi|2618693|gb|AAB84340.1| putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 1094
Score = 30.8 bits (68), Expect = 9.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 60 SVLISDWHNFMHTKKKISWIGTAKIFI 140
SV++ W N + KKKI WIG K+ +
Sbjct: 549 SVMMDFWWNSVQDKKKIHWIGAQKLML 575
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,654,596
Number of Sequences: 1393205
Number of extensions: 9621638
Number of successful extensions: 26060
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26014
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
