Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002828A_C01 KMC002828A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO26690.1|AF478377_1 gag-pol polyprotein [Vitis vinifera] 65 5e-10
gb|AAO26684.1|AF478370_1 gag-pol polyprotein [Vitis vinifera] 65 5e-10
gb|AAO26683.1|AF478369_1 gag-pol polyprotein [Vitis vinifera] 63 2e-09
ref|NP_188873.1| hypothetical protein; protein id: At3g22340.1 [... 46 3e-04
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 42 0.006
>gb|AAO26690.1|AF478377_1 gag-pol polyprotein [Vitis vinifera]
Length = 326
Score = 65.1 bits (157), Expect = 5e-10
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Frame = -3
Query: 547 WVGQILSEMGIERISPMPLWCDNQAALHISSNP-----SSLSMKELNILRWIAIFTS*ET 383
W+ Q+L E+G++ P LWCDNQAALHI++NP + + + +R E
Sbjct: 229 WIHQLLCEVGMKCTMPAKLWCDNQAALHIAANPVYHERTKHIEVDCHFIR--------EK 280
Query: 382 STEPLSLLLMLEQATRLADVFTKALNGVRNDFICNQL 272
E L ++ +L D+FTKALNG R ++ CN+L
Sbjct: 281 IEENLVSTDYVKTGEQLGDIFTKALNGTRVEYFCNKL 317
>gb|AAO26684.1|AF478370_1 gag-pol polyprotein [Vitis vinifera]
Length = 326
Score = 65.1 bits (157), Expect = 5e-10
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Frame = -3
Query: 547 WVGQILSEMGIERISPMPLWCDNQAALHISSNP-----SSLSMKELNILRWIAIFTS*ET 383
W+ Q+L E+G++ P LWCDNQAALHI++NP + + + +R E
Sbjct: 229 WIHQLLCEVGMKCTMPAKLWCDNQAALHIAANPVYHERTKHIEVDCHFIR--------EK 280
Query: 382 STEPLSLLLMLEQATRLADVFTKALNGVRNDFICNQL 272
E L ++ +L D+FTKALNG R ++ CN+L
Sbjct: 281 IEENLVSTGYVKTGEQLGDIFTKALNGTRVEYFCNKL 317
>gb|AAO26683.1|AF478369_1 gag-pol polyprotein [Vitis vinifera]
Length = 326
Score = 63.2 bits (152), Expect = 2e-09
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Frame = -3
Query: 547 WVGQILSEMGIERISPMPLWCDNQAALHISSNP-----SSLSMKELNILRWIAIFTS*ET 383
W+ Q+L E+G++ P LWCDNQAALHI++NP + + + +R E
Sbjct: 229 WIHQLLCEVGMKCTMPAKLWCDNQAALHIAANPVYHERTKHIEVDCHFIR--------EK 280
Query: 382 STEPLSLLLMLEQATRLADVFTKALNGVRNDFICNQL 272
E L ++ +L D+FTKALNG R + CN+L
Sbjct: 281 IEENLVSTGYVKTGEQLGDIFTKALNGTRVECFCNKL 317
>ref|NP_188873.1| hypothetical protein; protein id: At3g22340.1 [Arabidopsis
thaliana]
Length = 220
Score = 45.8 bits (107), Expect = 3e-04
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Frame = -3
Query: 547 WVGQILSEMGIERISPMPLWCDNQAALHISSNP----------SSLSMKELNILRWIAIF 398
W+ Q+L +G++ SP+PL+CDNQ+A+++S+NP S I+R +
Sbjct: 98 WLRQLLITLGVDCSSPIPLFCDNQSAIYLSANPVFHERTKHVGSDCHFIRDEIVR--GVI 155
Query: 397 TS*ETSTEPLSLLLMLEQATRLADVFTKALNGVRNDFICNQLR 269
ST +LAD+FTKAL R +F+ + L+
Sbjct: 156 APQHVSTH-----------LQLADIFTKALG--RKEFVTSILQ 185
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 41.6 bits (96), Expect = 0.006
Identities = 28/88 (31%), Positives = 49/88 (54%)
Frame = -3
Query: 547 WVGQILSEMGIERISPMPLWCDNQAALHISSNPSSLSMKELNILRWIAIFTS*ETSTEPL 368
W+ ++L E+GI +P L+CD++AA+ I++NP + +I R + + + +
Sbjct: 1394 WLNKLLKELGITLAAPTRLFCDSKAAISIAANP-VFHERTKHIER--DCHSVRDAVRDGI 1450
Query: 367 SLLLMLEQATRLADVFTKALNGVRNDFI 284
+ + +LAD+FTKAL RN FI
Sbjct: 1451 ITTHHVRTSEQLADIFTKALG--RNQFI 1476
Score = 33.9 bits (76), Expect = 1.3
Identities = 19/34 (55%), Positives = 24/34 (69%), Gaps = 1/34 (2%)
Frame = -2
Query: 437 HERTKHIEVDCHFHFVRNFNRT-LISTSYVRTGD 339
HERTKHIE DC H VR+ R +I+T +VRT +
Sbjct: 1429 HERTKHIERDC--HSVRDAVRDGIITTHHVRTSE 1460
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,477,811
Number of Sequences: 1393205
Number of extensions: 9619162
Number of successful extensions: 19644
Number of sequences better than 10.0: 206
Number of HSP's better than 10.0 without gapping: 18901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19512
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
