Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002813A_C01 KMC002813A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK50412.1|AC021891_13 Putative retroelement [Oryza sativa] 40 0.022
dbj|BAA92406.1| unnamed protein product [Oryza sativa (japonica ... 39 0.063
gb|AAM23251.1|AC092553_17 Putative pol polyprotein [Oryza sativa... 39 0.063
gb|AAM12305.1|AC091680_6 hypothetical protein [Oryza sativa (jap... 38 0.11
gb|AAO72413.1| gag-pol polyprotein [Oryza sativa (japonica culti... 38 0.11
>gb|AAK50412.1|AC021891_13 Putative retroelement [Oryza sativa]
Length = 1217
Score = 40.0 bits (92), Expect = 0.022
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -1
Query: 504 RKRGVTE--GPTVSHEARRSHRVKCANCEEFGHDSWECQRDKSKRQEKVTVRS 352
R RG T+ G S R +KC NCEEFGH S +C K K+ E V++
Sbjct: 249 RGRGGTQRSGGGSSGGGRDKSHIKCFNCEEFGHYSTQCPHPKKKKAEAHLVQT 301
>dbj|BAA92406.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1330
Score = 38.5 bits (88), Expect = 0.063
Identities = 15/38 (39%), Positives = 26/38 (67%)
Frame = -1
Query: 486 EGPTVSHEARRSHRVKCANCEEFGHDSWECQRDKSKRQ 373
E T ++ +R RVKC NC+EFGH + +C++ + +R+
Sbjct: 217 EAATGANSSRDISRVKCFNCDEFGHYARQCRKPRRQRR 254
>gb|AAM23251.1|AC092553_17 Putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|21326494|gb|AAM47622.1|AC122147_11 Putative pol
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1426
Score = 38.5 bits (88), Expect = 0.063
Identities = 15/38 (39%), Positives = 26/38 (67%)
Frame = -1
Query: 486 EGPTVSHEARRSHRVKCANCEEFGHDSWECQRDKSKRQ 373
E T ++ +R RVKC NC+EFGH + +C++ + +R+
Sbjct: 284 EAATGANSSRDISRVKCFNCDEFGHYARQCRKPRRQRR 321
>gb|AAM12305.1|AC091680_6 hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|22213193|gb|AAM94533.1| putative zink knuckle domain
containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 429
Score = 37.7 bits (86), Expect = 0.11
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 507 NRKRGVTEGPTVSHEARRSHR--VKCANCEEFGHDSWEC-QRDKSKRQEKV 364
N G P + RR H+ V+C C E GH SW+C Q+ K K +KV
Sbjct: 306 NSHEGSNSVPCPTPSKRRGHKAGVECFTCHEMGHYSWDCPQKAKMKCPQKV 356
>gb|AAO72413.1| gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1339
Score = 37.7 bits (86), Expect = 0.11
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -1
Query: 456 RSHRVKCANCEEFGHDSWECQRDKSKRQE 370
+SH +KC NCEEFGH S +C K K+ E
Sbjct: 230 KSH-IKCFNCEEFGHYSTQCPHPKKKKAE 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,703,874
Number of Sequences: 1393205
Number of extensions: 10375567
Number of successful extensions: 27908
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 26907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27877
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
