Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002787A_C01 KMC002787A_c01
(644 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC36318.1| leucine-rich receptor-like protein kinase [Malus ... 74 1e-12
dbj|BAB40094.1| putative receptor protein kinase [Oryza sativa (... 59 7e-08
ref|NP_174166.1| leucine-rich repeat transmembrane protein kinas... 55 1e-06
ref|NP_194578.1| leucine-rich repeat transmembrane protein kinas... 35 0.66
ref|NP_268060.1| bifunctional protein BirA (EC 6.3.4.15) [Lactoc... 34 1.9
>gb|AAC36318.1| leucine-rich receptor-like protein kinase [Malus x domestica]
Length = 999
Score = 74.3 bits (181), Expect = 1e-12
Identities = 34/42 (80%), Positives = 37/42 (87%)
Frame = -1
Query: 644 SMRRVVKMLQEVGAESHTKPAKKDGKLTPYYYEDASDHGSVA 519
SMRRVVK+LQEVG E H + AKK+GKLTPYYYED SDHGSVA
Sbjct: 958 SMRRVVKLLQEVGTEKHPQAAKKEGKLTPYYYEDTSDHGSVA 999
>dbj|BAB40094.1| putative receptor protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 1002
Score = 58.5 bits (140), Expect = 7e-08
Identities = 28/40 (70%), Positives = 32/40 (80%)
Frame = -1
Query: 644 SMRRVVKMLQEVGAESHTKPAKKDGKLTPYYYEDASDHGS 525
+MRRVVKMLQEV AE+ +KDGKL+PYYYED SD GS
Sbjct: 961 AMRRVVKMLQEVRAEATRPRLEKDGKLSPYYYEDTSDQGS 1000
>ref|NP_174166.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g28440.1, supported by cDNA: gi_20260671
[Arabidopsis thaliana] gi|25287711|pir||F86410 protein
F3M18.12 [imported] - Arabidopsis thaliana
gi|6560764|gb|AAF16764.1|AC010155_17 F3M18.12
[Arabidopsis thaliana] gi|20260672|gb|AAM13234.1|
putative receptor protein kinase [Arabidopsis thaliana]
Length = 996
Score = 54.7 bits (130), Expect = 1e-06
Identities = 29/46 (63%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Frame = -1
Query: 644 SMRRVVKMLQEVGAESHTKPAK----KDGKLTPYYYEDASDHGSVA 519
SMRRVVKMLQE+G K KDGKLTPYY ED SD GS+A
Sbjct: 951 SMRRVVKMLQEIGGGDEDSLHKIRDDKDGKLTPYYNEDTSDQGSIA 996
>ref|NP_194578.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At4g28490.1, supported by cDNA: gi_166849
[Arabidopsis thaliana] gi|1350783|sp|P47735|RLK5_ARATH
Receptor-like protein kinase 5 precursor
gi|282883|pir||S27756 receptor-like protein kinase 5 (EC
2.7.1.-) precursor - Arabidopsis thaliana
gi|166850|gb|AAA32859.1| receptor-like protein kinase
gi|2842492|emb|CAA16889.1| receptor-like protein kinase 5
precursor (RLK5) [Arabidopsis thaliana]
gi|7269703|emb|CAB79651.1| receptor-like protein kinase 5
precursor (RLK5) [Arabidopsis thaliana]
Length = 999
Score = 35.4 bits (80), Expect = 0.66
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 6/40 (15%)
Frame = -1
Query: 644 SMRRVVKMLQEVG------AESHTKPAKKDGKLTPYYYED 543
SMR+VV MLQEV + + +K +K GKL+PYY ED
Sbjct: 956 SMRKVVIMLQEVSGAVPCSSPNTSKRSKTGGKLSPYYTED 995
>ref|NP_268060.1| bifunctional protein BirA (EC 6.3.4.15) [Lactococcus lactis subsp.
lactis] gi|25528935|pir||G86862
biotin-[acetyl-CoA-carboxylase] ligase (EC 6.3.4.15)
[imported] - Lactococcus lactis subsp. lactis (strain
IL1403) gi|12724939|gb|AAK06001.1|AE006420_1
bifunctional protein BirA (EC 6.3.4.15) [Lactococcus
lactis subsp. lactis]
Length = 250
Score = 33.9 bits (76), Expect = 1.9
Identities = 14/39 (35%), Positives = 24/39 (60%)
Frame = +1
Query: 325 INSSSLYFPPKIENRILSVFFSQLCIVNQHSILGKIWRE 441
IN S FP +IE R S+F+++ +++ ++ KIW E
Sbjct: 143 INFSISQFPTEIEERATSLFYNEQANISRSELIAKIWSE 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,910,641
Number of Sequences: 1393205
Number of extensions: 11507146
Number of successful extensions: 24559
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24547
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
