Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002779A_C01 KMC002779A_c01
(760 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192770.1| isoleucine-tRNA ligase - like protein; protein ... 62 9e-09
ref|NP_110703.1| Predicted membrane protein [Thermoplasma volcan... 35 0.90
ref|NP_602617.1| Hemolysin [Fusobacterium nucleatum subsp. nucle... 34 2.6
ref|NP_603039.1| Hemolysin [Fusobacterium nucleatum subsp. nucle... 34 2.6
gb|AAC03423.2| histone acetyltransferase HAT B [Zea mays] gi|628... 33 3.4
>ref|NP_192770.1| isoleucine-tRNA ligase - like protein; protein id: At4g10320.1
[Arabidopsis thaliana] gi|7437548|pir||T04047
isoleucine-tRNA ligase homolog F24G24.120 - Arabidopsis
thaliana gi|4538961|emb|CAB39785.1| isoleucine-tRNA
ligase-like protein [Arabidopsis thaliana]
gi|7267729|emb|CAB78155.1| isoleucine-tRNA ligase-like
protein [Arabidopsis thaliana]
Length = 1254
Score = 62.0 bits (149), Expect = 9e-09
Identities = 55/180 (30%), Positives = 78/180 (42%), Gaps = 60/180 (33%)
Frame = -1
Query: 760 IRDAIGSHLLSNSLMPNYAVVIGEESF----------HGISNMSFSITLARPTLMFNQNA 611
I+D+IGS LL +SLMP++AV+I +E+F + +S+ I+LARP L FN+ A
Sbjct: 1074 IKDSIGSTLLLSSLMPSHAVIIADETFTPKETSDESVKKVPKLSYKISLARPALKFNEEA 1133
Query: 610 IRSLFTGEEKFTDN-LQTYLLSRDHSN--------------------LKSEFQ------- 515
+ +L++GE N +LSR N +K F+
Sbjct: 1134 VLALYSGESPSHHNRFSLSILSRFLFNVYIYGSRRCEICNRASNILVIKGSFEFEVRVPS 1193
Query: 514 ---SGNGKKF-------------------VDSIEGHPAVEVVLGEHVFLSVGDYYLAAPN 401
G+ K V IE P VVLGEH+ LSVGD L+ N
Sbjct: 1194 RRWEGSLVKLLLTQIVYFIILMYLVWQITVSCIENVPVATVVLGEHLHLSVGDDLLSKRN 1253
>ref|NP_110703.1| Predicted membrane protein [Thermoplasma volcanium]
gi|14324399|dbj|BAB59327.1| unknown product
[Thermoplasma volcanium]
Length = 237
Score = 35.4 bits (80), Expect = 0.90
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = -1
Query: 727 NSLMPNYAVVIGEESFHGISNMSFSITLARPTLMFNQNAIRSLFTGEE 584
+ +MP+Y I ++ +S+ +FS+T+A PT N+ ++ S+ G +
Sbjct: 110 SGIMPSYNFSITIVNYEHLSSQNFSLTIASPTFTLNETSLNSIAKGSD 157
>ref|NP_602617.1| Hemolysin [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|19713053|gb|AAL93916.1| Hemolysin [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 2806
Score = 33.9 bits (76), Expect = 2.6
Identities = 30/86 (34%), Positives = 42/86 (47%), Gaps = 9/86 (10%)
Frame = -1
Query: 655 SITLARPTLMFNQNAIRSLFTGEEKFTDNLQTYLLSRDHSNLK---------SEFQSGNG 503
S+++A P M + +A S GE K+ DN T+L+ D SNLK + +GNG
Sbjct: 2084 SLSIA-PNGMPSGSANYSKTNGERKYVDNATTFLIG-DGSNLKVGKVENTAGAIGTTGNG 2141
Query: 502 KKFVDSIEGHPAVEVVLGEHVFLSVG 425
K +D GH V + V SVG
Sbjct: 2142 KLSIDEYVGHNLENVDKSKTVGGSVG 2167
>ref|NP_603039.1| Hemolysin [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|19713561|gb|AAL94338.1| Hemolysin [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 2462
Score = 33.9 bits (76), Expect = 2.6
Identities = 30/86 (34%), Positives = 42/86 (47%), Gaps = 9/86 (10%)
Frame = -1
Query: 655 SITLARPTLMFNQNAIRSLFTGEEKFTDNLQTYLLSRDHSNLK---------SEFQSGNG 503
S+++A P M + +A S GE K+ DN T+L+ D SNLK + +GNG
Sbjct: 1901 SLSIA-PNGMPSGSANYSKTNGERKYVDNATTFLIG-DGSNLKVGKVENTAGAIGTTGNG 1958
Query: 502 KKFVDSIEGHPAVEVVLGEHVFLSVG 425
K +D GH V + V SVG
Sbjct: 1959 KLSIDEYVGHNLENVDKSKTVGGSVG 1984
>gb|AAC03423.2| histone acetyltransferase HAT B [Zea mays]
gi|6288802|gb|AAF06742.1|AF171927_1 histone
acetyltransferase HAT-B-p50 [Zea mays]
Length = 468
Score = 33.5 bits (75), Expect = 3.4
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Frame = -1
Query: 703 VVIGEESFHGISNMSFS--------ITLARPTLMFNQNAIRSLFTGEEKFTDNLQTYLLS 548
V I +SFHG +++SF IT +P L QN +E+F L T+ S
Sbjct: 82 VWISAKSFHGYADVSFDETSDGGKGITDLKPVL---QNIFGENLVEKEEF---LHTF--S 133
Query: 547 RDHSNLKSEFQSGNGKKFVDSIEGHPAVEVVLGEHVFLSVGDYYLAAPNLTNLVQGN 377
++ +++ +G+ K S E PAVE+V E + Y P + LV+G+
Sbjct: 134 KECEYIRTAVTNGSAIKHDGSYESDPAVEIVRVELQGAAAFLYSRLVPLVLLLVEGS 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,550,840
Number of Sequences: 1393205
Number of extensions: 12693178
Number of successful extensions: 29591
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 28625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29563
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
