Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002772A_C01 KMC002772A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prf||1502333A lipoxygenase 3 169 1e-41
pir||S01864 lipoxygenase (EC 1.13.11.12) 3 - soybean gi|18679|em... 169 1e-41
sp|P09186|LOX3_SOYBN Seed lipoxygenase-3 (L-3) gi|18677|emb|CAA3... 169 1e-41
pdb|1LNH| Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprote... 169 1e-41
emb|CAB76909.1| lipoxygenase [Cicer arietinum] 168 3e-41
>prf||1502333A lipoxygenase 3
Length = 858
Score = 169 bits (428), Expect = 1e-41
Identities = 80/100 (80%), Positives = 92/100 (92%)
Frame = -2
Query: 481 TPKFQALRDLSVIEILSRHASDEVYLGQRDNPNWTSDTRALQAFQKFGSKLQEIEGKITE 302
TPKFQ L DLSVIEILSRHASDEVYLG+RDNPNWTSDTRAL+AF++FG+KL +IE K++E
Sbjct: 759 TPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSE 818
Query: 301 RNKDSSLKNRIGPVELPYTLLLPSSEEGLTFRGIPNSISI 182
RN D L+NR GPV++PYTLLLPSS+EGLTFRGIPNSISI
Sbjct: 819 RNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 858
>pir||S01864 lipoxygenase (EC 1.13.11.12) 3 - soybean gi|18679|emb|CAA31664.1|
lox-3 protein ( AA 1-857) [Glycine max]
Length = 857
Score = 169 bits (428), Expect = 1e-41
Identities = 80/100 (80%), Positives = 92/100 (92%)
Frame = -2
Query: 481 TPKFQALRDLSVIEILSRHASDEVYLGQRDNPNWTSDTRALQAFQKFGSKLQEIEGKITE 302
TPKFQ L DLSVIEILSRHASDEVYLG+RDNPNWTSDTRAL+AF++FG+KL +IE K++E
Sbjct: 758 TPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSE 817
Query: 301 RNKDSSLKNRIGPVELPYTLLLPSSEEGLTFRGIPNSISI 182
RN D L+NR GPV++PYTLLLPSS+EGLTFRGIPNSISI
Sbjct: 818 RNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857
>sp|P09186|LOX3_SOYBN Seed lipoxygenase-3 (L-3) gi|18677|emb|CAA30016.1| lipoxygenase
[Glycine max]
Length = 857
Score = 169 bits (428), Expect = 1e-41
Identities = 80/100 (80%), Positives = 92/100 (92%)
Frame = -2
Query: 481 TPKFQALRDLSVIEILSRHASDEVYLGQRDNPNWTSDTRALQAFQKFGSKLQEIEGKITE 302
TPKFQ L DLSVIEILSRHASDEVYLG+RDNPNWTSDTRAL+AF++FG+KL +IE K++E
Sbjct: 758 TPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSE 817
Query: 301 RNKDSSLKNRIGPVELPYTLLLPSSEEGLTFRGIPNSISI 182
RN D L+NR GPV++PYTLLLPSS+EGLTFRGIPNSISI
Sbjct: 818 RNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857
>pdb|1LNH| Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
gi|4388888|pdb|1BYT| Lipoxygenase-3 (Soybean) Complex
With 4-Nitrocatechol gi|17942578|pdb|1IK3|A Chain A,
Lipoxygenase-3 (Soybean) Complex With
13(S)-Hydroperoxy-9(Z) ,11(E)-Octadecadienoic Acid
gi|1794172|gb|AAB41272.1| lipoxygenase-3
Length = 857
Score = 169 bits (428), Expect = 1e-41
Identities = 80/100 (80%), Positives = 92/100 (92%)
Frame = -2
Query: 481 TPKFQALRDLSVIEILSRHASDEVYLGQRDNPNWTSDTRALQAFQKFGSKLQEIEGKITE 302
TPKFQ L DLSVIEILSRHASDEVYLG+RDNPNWTSDTRAL+AF++FG+KL +IE K++E
Sbjct: 758 TPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSE 817
Query: 301 RNKDSSLKNRIGPVELPYTLLLPSSEEGLTFRGIPNSISI 182
RN D L+NR GPV++PYTLLLPSS+EGLTFRGIPNSISI
Sbjct: 818 RNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857
>emb|CAB76909.1| lipoxygenase [Cicer arietinum]
Length = 540
Score = 168 bits (425), Expect = 3e-41
Identities = 84/100 (84%), Positives = 91/100 (91%)
Frame = -2
Query: 481 TPKFQALRDLSVIEILSRHASDEVYLGQRDNPNWTSDTRALQAFQKFGSKLQEIEGKITE 302
TPK+Q L DLSVIEILSRHASDEVYLG+RD+ WTSD+RA+QAFQKFGSKL EIEGKI E
Sbjct: 441 TPKYQTLVDLSVIEILSRHASDEVYLGERDSKFWTSDSRAVQAFQKFGSKLTEIEGKIIE 500
Query: 301 RNKDSSLKNRIGPVELPYTLLLPSSEEGLTFRGIPNSISI 182
RNKDSSLKNR GP++LPY LLL SSEEGLTFRGIPNSISI
Sbjct: 501 RNKDSSLKNRYGPIQLPYNLLLRSSEEGLTFRGIPNSISI 540
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,058,372
Number of Sequences: 1393205
Number of extensions: 7967699
Number of successful extensions: 16959
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 16591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16916
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
