Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002771A_C01 KMC002771A_c01
(702 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO45753.1| RING/C3HC4/PHD zinc finger-like protein [Cucumis ... 131 8e-30
dbj|BAC23030.1| ring H2 zinc finger [Solanum tuberosum] 105 6e-22
gb|AAF27026.1|AC009177_16 putative RING-H2 zinc finger protein A... 93 3e-18
gb|AAL86301.1| putative RING-H2 zinc finger protein ATL6 [Arabid... 93 3e-18
ref|NP_566249.1| putative RING-H2 zinc finger protein ATL6; prot... 93 3e-18
>gb|AAO45753.1| RING/C3HC4/PHD zinc finger-like protein [Cucumis melo]
Length = 379
Score = 131 bits (330), Expect = 8e-30
Identities = 68/107 (63%), Positives = 82/107 (76%), Gaps = 4/107 (3%)
Frame = -1
Query: 693 WHFPRSHSTGHSLVQPGEYTDRFTLRLPVGVRKQIMDRQLQRASSLIVLPREGSSRVGYR 514
W FPRSHSTGHSLVQPGE T+RFTLRLPV +RKQ+++R+L RA+S++VL R+ SS GYR
Sbjct: 245 WLFPRSHSTGHSLVQPGEDTERFTLRLPVEIRKQVVNRKLHRATSMVVLARQSSSMRGYR 304
Query: 513 TG-GNGSSRGKASR---RLDQGSKSDRWVFSKAPSFLMRALSIRSPR 385
G G GSSRGK R RLD+ SKSDRWV S P F R S+++PR
Sbjct: 305 FGSGEGSSRGKYYRRLERLDRTSKSDRWVLSMTPPFFTRMSSMKTPR 351
>dbj|BAC23030.1| ring H2 zinc finger [Solanum tuberosum]
Length = 154
Score = 105 bits (262), Expect = 6e-22
Identities = 63/119 (52%), Positives = 75/119 (62%), Gaps = 7/119 (5%)
Frame = -1
Query: 681 RSHSTGHSLVQPGEYTDRFTLRLPVGVRKQIMDRQL--QRASSLIVLPREGSSRVGYRTG 508
RSHSTGHSLV PGE DR+TLRLP VRK +MDR L + S + LPR GS+ GYR G
Sbjct: 3 RSHSTGHSLVVPGENLDRYTLRLPEKVRKDVMDRALLNRTRSCAVTLPRHGSTTRGYRAG 62
Query: 507 -GNGSSRG----KASRRLDQGSKSDRWVFSKAPSFLMRALSIRSPRPRTRNSDDEASSS 346
G GS+RG K R D +KSDRW AP F R S++SP+ R N +EAS+S
Sbjct: 63 PGEGSNRGTRSFKRIDRFDPEAKSDRWFLKIAPPFFTRGSSMKSPKLRADN--EEASTS 119
>gb|AAF27026.1|AC009177_16 putative RING-H2 zinc finger protein ATL6 [Arabidopsis thaliana]
Length = 392
Score = 93.2 bits (230), Expect = 3e-18
Identities = 54/95 (56%), Positives = 65/95 (67%), Gaps = 1/95 (1%)
Frame = -1
Query: 687 FPRSHSTGHSLVQPGEYTDRFTLRLPVGVRKQIM-DRQLQRASSLIVLPREGSSRVGYRT 511
F RSH+TGHS+VQPGE T+RFTLRLP VRK+IM D +L R +SL+VLPR GSSR
Sbjct: 229 FSRSHTTGHSVVQPGECTERFTLRLPEDVRKRIMKDWKLNRTNSLLVLPRGGSSR----- 283
Query: 510 GGNGSSRGKASRRLDQGSKSDRWVFSKAPSFLMRA 406
RGK R ++SDRW+F K PSFL R+
Sbjct: 284 ------RGKPIDR--SRARSDRWLFRKTPSFLWRS 310
>gb|AAL86301.1| putative RING-H2 zinc finger protein ATL6 [Arabidopsis thaliana]
Length = 388
Score = 93.2 bits (230), Expect = 3e-18
Identities = 54/95 (56%), Positives = 65/95 (67%), Gaps = 1/95 (1%)
Frame = -1
Query: 687 FPRSHSTGHSLVQPGEYTDRFTLRLPVGVRKQIM-DRQLQRASSLIVLPREGSSRVGYRT 511
F RSH+TGHS+VQPGE T+RFTLRLP VRK+IM D +L R +SL+VLPR GSSR
Sbjct: 235 FSRSHTTGHSVVQPGECTERFTLRLPEDVRKRIMKDWKLNRTNSLLVLPRGGSSR----- 289
Query: 510 GGNGSSRGKASRRLDQGSKSDRWVFSKAPSFLMRA 406
RGK R ++SDRW+F K PSFL R+
Sbjct: 290 ------RGKPIDR--SRARSDRWLFRKTPSFLWRS 316
>ref|NP_566249.1| putative RING-H2 zinc finger protein ATL6; protein id: At3g05200.1,
supported by cDNA: gi_4928402 [Arabidopsis thaliana]
Length = 398
Score = 93.2 bits (230), Expect = 3e-18
Identities = 54/95 (56%), Positives = 65/95 (67%), Gaps = 1/95 (1%)
Frame = -1
Query: 687 FPRSHSTGHSLVQPGEYTDRFTLRLPVGVRKQIM-DRQLQRASSLIVLPREGSSRVGYRT 511
F RSH+TGHS+VQPGE T+RFTLRLP VRK+IM D +L R +SL+VLPR GSSR
Sbjct: 235 FSRSHTTGHSVVQPGECTERFTLRLPEDVRKRIMKDWKLNRTNSLLVLPRGGSSR----- 289
Query: 510 GGNGSSRGKASRRLDQGSKSDRWVFSKAPSFLMRA 406
RGK R ++SDRW+F K PSFL R+
Sbjct: 290 ------RGKPIDR--SRARSDRWLFRKTPSFLWRS 316
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 677,657,210
Number of Sequences: 1393205
Number of extensions: 16513860
Number of successful extensions: 74162
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 67600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73668
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
